# RSAT - compare-matrices result

### Analysis: result (03/11/2015 07:00)

### Status: running...

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`Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/jaspar_core_vertebrates_2015_03.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_vs_db_jaspar_core_vertebrates`

## Input files

Type | File
--- | ---
file1 | peak-motifs_oligos_7nt_mkv4_m1.tf
file2 | ../../../../../../../../../motif_databases/JASPAR/jaspar_core_vertebrates_2015_03.tf

## Output files

Type | File
--- | ---
match_table_txt | peak-motifs_oligos_7nt_mkv4_m1_vs_db_jaspar_core_vertebrates.tab
match_table_html | peak-motifs_oligos_7nt_mkv4_m1_vs_db_jaspar_core_vertebrates.html
alignments_1ton | peak-motifs_oligos_7nt_mkv4_m1_vs_db_jaspar_core_vertebrates_alignments_1ton.tab
alignments_1ton_html | peak-motifs_oligos_7nt_mkv4_m1_vs_db_jaspar_core_vertebrates_alignments_1ton.html

## Directories

Type | Directory
--- | ---
output | .
aligned_logos | peak-motifs_oligos_7nt_mkv4_m1_vs_db_jaspar_core_vertebrates_aligned_logos