; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_links.txt
; Input files
;	input	/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	23	21	11	66	0	0	3	3	0	6	74	75	5	7	52	17	18
c	17	11	10	1	0	0	0	4	0	69	0	0	8	48	10	18	17
g	22	24	43	6	0	0	71	2	75	0	0	0	5	11	6	17	16
t	13	19	11	2	75	75	1	66	0	0	1	0	57	9	7	23	24
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1_rc.png
a	35	28	19	17	94	0	1	3	4	19	5	113	114	5	56	51	29	29
c	27	33	27	18	10	1	0	0	90	2	107	1	0	6	23	18	26	25
g	25	25	18	23	6	0	1	108	2	90	0	0	1	10	19	27	32	26
t	28	29	51	57	5	114	113	4	19	4	3	1	0	94	17	19	28	35
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2_rc.png
a	15	15	19	10	3	10	4	0	4	0	63	62	0	58	3	28	17	18
c	16	20	6	8	1	3	0	1	0	62	2	0	53	4	45	13	14	17
g	17	14	13	45	4	53	0	2	62	0	1	0	3	1	8	6	20	16
t	18	17	28	3	58	0	62	63	0	4	0	4	10	3	10	19	15	15
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3_rc.png
a	30	15	9	10	58	0	0	0	0	64	0	71	72	1	17	12	15
c	11	23	5	9	1	0	0	1	72	2	69	1	0	52	10	24	19
g	18	15	7	44	10	0	0	68	0	3	0	0	0	2	9	13	13
t	13	19	51	9	3	72	72	3	0	3	3	0	0	17	36	23	25
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m4.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m4_rc.png
a	11	18	8	49	0	0	1	3	0	1	53	54	2	42	5	22	12	18
c	13	7	12	3	0	0	0	3	0	50	1	0	41	7	29	15	6	11
g	21	10	29	1	0	0	53	2	54	1	0	0	5	2	10	3	17	15
t	9	19	5	1	54	54	0	46	0	2	0	0	6	3	10	14	19	10
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m5.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m5_rc.png
; Host name	rsat-tagc
; Job started	2015-11-03.065730
; Job done	2015-11-03.065734
; Seconds	0.36
;	user	0.36
;	system	0.09
;	cuser	3.46
;	csystem	0.34
