RSAT - position-analysis result

Analysis: result (03/11/2015 06:55)

Command: position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title fetch-sequences_Schmidt_2011_mm9_CEBPA_SWEMBL_R0.12_702peaks_1slk_20151103_065518 -origin center -o $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab

Input files

Type	File
sequences	../../data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta

Output files

Type	File
output	peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
output_html	peak-motifs_test_profiles-1str-ovlp_1nt_ci20.html
clusters_k8	peak-motifs_test_profiles-1str-ovlp_1nt_ci20__k8.tab
cluster_heatmap_k8	peak-motifs_test_profiles-1str-ovlp_1nt_ci20__k8/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_profile_heatmap.pdf
cluster_occ_profiles_k8	peak-motifs_test_profiles-1str-ovlp_1nt_ci20__k8/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_occ_profiles_per_cluster.pdf
cluster_freq_profiles_k8	peak-motifs_test_profiles-1str-ovlp_1nt_ci20__k8/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_freq_profiles_per_cluster.pdf
cluster_median_profiles_k8	peak-motifs_test_profiles-1str-ovlp_1nt_ci20__k8/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_median_profiles_per_cluster.pdf
cluster_median_profiles_table_k8	peak-motifs_test_profiles-1str-ovlp_1nt_ci20__k8/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_median_profiles_per_cluster.tab
graph_index	peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html

Directories

Type	Directory
output	.
clusters_k8	peak-motifs_test_profiles-1str-ovlp_1nt_ci20__k8
graphs	peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graphs