One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/jaspar_core_vertebrates_2015_03.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_jaspar_core_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift5 ; 13 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_6nt_mkv3_m2_shift5 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=11; shift=5; ncol=20; -----yrAGGTCAGar---- ; Alignment reference a 0 0 0 0 0 21 22 85 0 0 0 0 84 1 33 23 0 0 0 0 c 0 0 0 0 0 25 21 0 0 0 0 86 1 2 19 11 0 0 0 0 g 0 0 0 0 0 14 28 1 86 86 0 0 1 75 17 32 0 0 0 0 t 0 0 0 0 0 26 15 0 0 0 86 0 0 8 17 20 0 0 0 0

MA0071.1_shift3 (RORA_1) 0.977 0.601 10.437 0.605 0.960 0.202 0.987 1 4 1 4 1 1 1 1.857 1
; oligos_6nt_mkv3_m2 versus MA0071.1 (RORA_1); m=1/12; ncol2=10; w=8; offset=-2; strand=D; shift=3; score= 1.8571; ---wwcwAGGTCA------- ; cor=0.977; Ncor=0.601; logoDP=10.437; NIcor=0.605; NsEucl=0.960; SSD=0.202; NSW=0.987; rcor=1; rNcor=4; rlogoDP=1; rNIcor=4; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=1.857; match_rank=1 a 0 0 0 15 9 6 11 21 0 0 0 0 25 0 0 0 0 0 0 0 c 0 0 0 1 1 12 2 0 0 0 0 25 0 0 0 0 0 0 0 0 g 0 0 0 2 0 4 5 4 25 25 0 0 0 0 0 0 0 0 0 0 t 0 0 0 7 15 3 7 0 0 0 25 0 0 0 0 0 0 0 0 0

MA0512.1_shift4 (Rxra) 0.889 0.741 8.430 0.732 0.927 1.056 0.947 4 1 5 1 2 4 3 2.857 2
; oligos_6nt_mkv3_m2 versus MA0512.1 (Rxra); m=2/12; ncol2=11; w=10; offset=-1; strand=D; shift=4; score= 2.8571; ----CArAGKTCAgd----- ; cor=0.889; Ncor=0.741; logoDP=8.430; NIcor=0.732; NsEucl=0.927; SSD=1.056; NSW=0.947; rcor=4; rNcor=1; rlogoDP=5; rNIcor=1; rNsEucl=2; rSSD=4; rNSW=3; rank_mean=2.857; match_rank=2 a 0 0 0 0 278 4154 2623 4877 0 0 0 0 5348 1150 1640 0 0 0 0 0 c 0 0 0 0 4521 418 252 0 0 0 583 5348 0 1070 742 0 0 0 0 0 g 0 0 0 0 305 9 2473 471 5348 3882 643 0 0 2336 1569 0 0 0 0 0 t 0 0 0 0 244 767 0 0 0 1466 4122 0 0 792 1397 0 0 0 0 0

MA0258.2_shift7 (ESR2) 0.909 0.481 7.498 0.480 0.926 0.898 0.950 2 8 8 6 3 2 2 4.429 3
; oligos_6nt_mkv3_m2 versus MA0258.2 (ESR2); m=3/12; ncol2=15; w=9; offset=2; strand=D; shift=7; score= 4.4286; -------rGGTCAsmstGaC ; cor=0.909; Ncor=0.481; logoDP=7.498; NIcor=0.480; NsEucl=0.926; SSD=0.898; NSW=0.950; rcor=2; rNcor=8; rlogoDP=8; rNIcor=6; rNsEucl=3; rSSD=2; rNSW=2; rank_mean=4.429; match_rank=3 a 0 0 0 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808 1602 1121 3278 434 c 0 0 0 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510 975 398 2056 6469 g 0 0 0 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173 533 6658 1391 363 t 0 0 0 0 0 0 0 174 644 41 7033 89 87 801 1228 1752 5133 66 1518 977

MA0141.2_shift1 (Esrrb) 0.902 0.481 9.026 0.473 0.915 0.918 0.943 3 7 4 7 4 3 4 4.571 4
; oligos_6nt_mkv3_m2 versus MA0141.2 (Esrrb); m=4/12; ncol2=12; w=8; offset=-4; strand=D; shift=1; score= 4.5714; -rgsyCAAGGTCA------- ; cor=0.902; Ncor=0.481; logoDP=9.026; NIcor=0.473; NsEucl=0.915; SSD=0.918; NSW=0.943; rcor=3; rNcor=7; rlogoDP=4; rNIcor=7; rNsEucl=4; rSSD=3; rNSW=4; rank_mean=4.571; match_rank=4 a 0 1055 673 403 260 312 3347 3590 33 12 180 9 3478 0 0 0 0 0 0 0 c 0 801 832 1212 1230 2653 32 2 2 11 43 3394 21 0 0 0 0 0 0 0 g 0 984 1352 1212 449 630 248 60 3597 3622 243 167 128 0 0 0 0 0 0 0 t 0 773 767 807 1702 51 27 6 29 16 3192 85 26 0 0 0 0 0 0 0

MA0592.1_shift4 (ESRRA) 0.822 0.685 9.380 0.666 0.904 1.828 0.909 7 2 3 2 8 9 9 5.714 5
; oligos_6nt_mkv3_m2 versus MA0592.1 (ESRRA); m=5/12; ncol2=11; w=10; offset=-1; strand=D; shift=4; score= 5.7143; ----yCAAGGTCAcm----- ; cor=0.822; Ncor=0.685; logoDP=9.380; NIcor=0.666; NsEucl=0.904; SSD=1.828; NSW=0.909; rcor=7; rNcor=2; rlogoDP=3; rNIcor=2; rNsEucl=8; rSSD=9; rNSW=9; rank_mean=5.714; match_rank=5 a 0 0 0 0 17 18 200 198 0 0 6 0 197 23 70 0 0 0 0 0 c 0 0 0 0 118 174 2 0 0 0 0 205 1 108 54 0 0 0 0 0 g 0 0 0 0 11 15 6 10 203 207 22 3 10 44 40 0 0 0 0 0 t 0 0 0 0 62 1 0 0 5 1 180 0 0 33 44 0 0 0 0 0

MA0160.1_shift6 (NR4A2) 0.854 0.621 7.578 0.622 0.898 1.342 0.916 5 3 7 3 11 5 6 5.714 6
; oligos_6nt_mkv3_m2 versus MA0160.1 (NR4A2); m=6/12; ncol2=8; w=8; offset=1; strand=D; shift=6; score= 5.7143; ------aAGGTCAc------ ; cor=0.854; Ncor=0.621; logoDP=7.578; NIcor=0.622; NsEucl=0.898; SSD=1.342; NSW=0.916; rcor=5; rNcor=3; rlogoDP=7; rNIcor=3; rNsEucl=11; rSSD=5; rNSW=6; rank_mean=5.714; match_rank=6 a 0 0 0 0 0 0 8 13 0 3 2 0 14 3 0 0 0 0 0 0 c 0 0 0 0 0 0 1 0 0 0 2 13 0 8 0 0 0 0 0 0 g 0 0 0 0 0 0 3 1 13 11 0 0 0 2 0 0 0 0 0 0 t 0 0 0 0 0 0 1 0 1 0 10 1 0 0 0 0 0 0 0 0

MA0072.1_shift0 (RORA_2) 0.838 0.471 10.296 0.463 0.900 1.622 0.910 6 9 2 8 9 7 8 7.000 7
; oligos_6nt_mkv3_m2 versus MA0072.1 (RORA_2); m=7/12; ncol2=14; w=9; offset=-5; strand=D; shift=0; score= 7; wwwAwbTAGGTCAr------ ; cor=0.838; Ncor=0.471; logoDP=10.296; NIcor=0.463; NsEucl=0.900; SSD=1.622; NSW=0.910; rcor=6; rNcor=9; rlogoDP=2; rNIcor=8; rNsEucl=9; rSSD=7; rNSW=8; rank_mean=7.000; match_rank=7 a 9 17 15 35 23 2 0 28 0 0 0 0 36 15 0 0 0 0 0 0 c 8 2 0 1 0 12 0 0 0 0 0 36 0 6 0 0 0 0 0 0 g 8 7 3 0 0 13 0 8 36 36 0 0 0 10 0 0 0 0 0 0 t 11 10 18 0 13 9 36 0 0 0 36 0 0 5 0 0 0 0 0 0

MA0504.1_shift5 (NR2C2) 0.797 0.585 6.029 0.552 0.911 1.916 0.913 9 5 10 5 6 10 7 7.429 8
; oligos_6nt_mkv3_m2 versus MA0504.1 (NR2C2); m=8/12; ncol2=15; w=11; offset=0; strand=D; shift=5; score= 7.4286; -----mgrGGTCArAGGTCA ; cor=0.797; Ncor=0.585; logoDP=6.029; NIcor=0.552; NsEucl=0.911; SSD=1.916; NSW=0.913; rcor=9; rNcor=5; rlogoDP=10; rNIcor=5; rNsEucl=6; rSSD=10; rNSW=7; rank_mean=7.429; match_rank=8 a 0 0 0 0 0 129 82 193 0 10 3 6 343 187 324 10 11 0 9 290 c 0 0 0 0 0 126 70 6 8 3 0 309 0 0 0 0 0 27 315 0 g 0 0 0 0 0 90 221 195 366 355 79 54 48 208 71 385 336 89 35 92 t 0 0 0 0 0 50 22 1 21 27 313 26 4 0 0 0 48 279 36 13

MA0112.2_shift2 (ESR1) 0.809 0.445 4.397 0.450 0.915 1.754 0.920 8 10 11 10 5 8 5 8.143 9
; oligos_6nt_mkv3_m2 versus MA0112.2 (ESR1); m=9/12; ncol2=20; w=11; offset=-3; strand=D; shift=2; score= 8.1429; --vkscmaGGtCAcccTGaC ; cor=0.809; Ncor=0.445; logoDP=4.397; NIcor=0.450; NsEucl=0.915; SSD=1.754; NSW=0.920; rcor=8; rNcor=10; rlogoDP=11; rNIcor=10; rNsEucl=5; rSSD=8; rNSW=5; rank_mean=8.143; match_rank=9 a 0 0 122 107 64 83 134 308 36 19 33 4 398 58 63 64 32 21 305 10 c 0 0 120 80 173 229 232 28 8 18 41 394 13 250 276 258 19 22 106 436 g 0 0 154 164 149 65 47 89 387 420 91 53 27 107 53 97 8 426 31 12 t 0 0 71 117 82 93 57 48 43 18 310 24 37 60 83 56 416 6 33 17

MA0505.1_shift0 (Nr5a2) 0.790 0.494 7.874 0.460 0.898 2.077 0.896 10 6 6 9 10 11 11 9.000 10
; oligos_6nt_mkv3_m2 versus MA0505.1 (Nr5a2); m=10/12; ncol2=15; w=10; offset=-5; strand=D; shift=0; score= 9; ragtTCAAGGyCAgs----- ; cor=0.790; Ncor=0.494; logoDP=7.874; NIcor=0.460; NsEucl=0.898; SSD=2.077; NSW=0.896; rcor=10; rNcor=6; rlogoDP=6; rNIcor=9; rNsEucl=10; rSSD=11; rNSW=11; rank_mean=9.000; match_rank=10 a 645 985 276 122 71 8 1685 1679 39 0 169 0 1437 271 249 0 0 0 0 0 c 224 170 198 378 351 1616 14 0 0 0 584 1568 20 345 693 0 0 0 0 0 g 634 336 990 366 23 74 0 23 1663 1702 61 12 90 740 454 0 0 0 0 0 t 199 211 238 836 1257 4 3 0 0 0 888 122 155 346 306 0 0 0 0 0

MA0066.1_shift5 (PPARG) 0.766 0.421 6.837 0.424 0.905 2.176 0.901 12 12 9 11 7 12 10 10.429 11
; oligos_6nt_mkv3_m2 versus MA0066.1 (PPARG); m=11/12; ncol2=20; w=11; offset=0; strand=D; shift=5; score=10.4286; -----sTrGGTCAcsgTGAC ; cor=0.766; Ncor=0.421; logoDP=6.837; NIcor=0.424; NsEucl=0.905; SSD=2.176; NSW=0.901; rcor=12; rNcor=12; rlogoDP=9; rNIcor=11; rNsEucl=7; rSSD=12; rNSW=10; rank_mean=10.429; match_rank=11 a 0 0 0 0 0 3 3 19 0 1 0 2 26 5 5 4 1 2 22 1 c 0 0 0 0 0 8 0 0 1 0 1 23 1 15 7 2 0 5 5 27 g 0 0 0 0 0 14 0 9 27 26 4 3 0 4 10 18 2 20 0 0 t 0 0 0 0 0 3 25 0 0 1 23 0 1 4 6 4 25 1 1 0

MA0089.1_rc_shift9 (NFE2L1::MafG_rc) 0.787 0.429 0.090 -0.133 0.860 1.403 0.883 11 11 12 12 12 6 12 10.857 12
; oligos_6nt_mkv3_m2 versus MA0089.1_rc (NFE2L1::MafG_rc); m=12/12; ncol2=6; w=6; offset=4; strand=R; shift=9; score=10.8571; ---------GTCATs----- ; cor=0.787; Ncor=0.429; logoDP=0.090; NIcor=-0.133; NsEucl=0.860; SSD=1.403; NSW=0.883; rcor=11; rNcor=11; rlogoDP=12; rNIcor=12; rNsEucl=12; rSSD=6; rNSW=12; rank_mean=10.857; match_rank=12 a 0 0 0 0 0 0 0 0 0 6 0 1 34 0 6 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 2 0 32 0 3 10 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 26 0 0 0 2 11 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 34 1 0 29 7 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_6nt_mkv3_m2_shift5 (oligos_6nt_mkv3_m2)																	; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=11; shift=5; ncol=20; -----yrAGGTCAGar---- ; Alignment reference a 0 0 0 0 0 21 22 85 0 0 0 0 84 1 33 23 0 0 0 0 c 0 0 0 0 0 25 21 0 0 0 0 86 1 2 19 11 0 0 0 0 g 0 0 0 0 0 14 28 1 86 86 0 0 1 75 17 32 0 0 0 0 t 0 0 0 0 0 26 15 0 0 0 86 0 0 8 17 20 0 0 0 0
MA0071.1_shift3 (RORA_1)	0.977	0.601	10.437	0.605	0.960	0.202	0.987	1	4	1	4	1	1	1	1.857	1	; oligos_6nt_mkv3_m2 versus MA0071.1 (RORA_1); m=1/12; ncol2=10; w=8; offset=-2; strand=D; shift=3; score= 1.8571; ---wwcwAGGTCA------- ; cor=0.977; Ncor=0.601; logoDP=10.437; NIcor=0.605; NsEucl=0.960; SSD=0.202; NSW=0.987; rcor=1; rNcor=4; rlogoDP=1; rNIcor=4; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=1.857; match_rank=1 a 0 0 0 15 9 6 11 21 0 0 0 0 25 0 0 0 0 0 0 0 c 0 0 0 1 1 12 2 0 0 0 0 25 0 0 0 0 0 0 0 0 g 0 0 0 2 0 4 5 4 25 25 0 0 0 0 0 0 0 0 0 0 t 0 0 0 7 15 3 7 0 0 0 25 0 0 0 0 0 0 0 0 0
MA0512.1_shift4 (Rxra)	0.889	0.741	8.430	0.732	0.927	1.056	0.947	4	1	5	1	2	4	3	2.857	2	; oligos_6nt_mkv3_m2 versus MA0512.1 (Rxra); m=2/12; ncol2=11; w=10; offset=-1; strand=D; shift=4; score= 2.8571; ----CArAGKTCAgd----- ; cor=0.889; Ncor=0.741; logoDP=8.430; NIcor=0.732; NsEucl=0.927; SSD=1.056; NSW=0.947; rcor=4; rNcor=1; rlogoDP=5; rNIcor=1; rNsEucl=2; rSSD=4; rNSW=3; rank_mean=2.857; match_rank=2 a 0 0 0 0 278 4154 2623 4877 0 0 0 0 5348 1150 1640 0 0 0 0 0 c 0 0 0 0 4521 418 252 0 0 0 583 5348 0 1070 742 0 0 0 0 0 g 0 0 0 0 305 9 2473 471 5348 3882 643 0 0 2336 1569 0 0 0 0 0 t 0 0 0 0 244 767 0 0 0 1466 4122 0 0 792 1397 0 0 0 0 0
MA0258.2_shift7 (ESR2)	0.909	0.481	7.498	0.480	0.926	0.898	0.950	2	8	8	6	3	2	2	4.429	3	; oligos_6nt_mkv3_m2 versus MA0258.2 (ESR2); m=3/12; ncol2=15; w=9; offset=2; strand=D; shift=7; score= 4.4286; -------rGGTCAsmstGaC ; cor=0.909; Ncor=0.481; logoDP=7.498; NIcor=0.480; NsEucl=0.926; SSD=0.898; NSW=0.950; rcor=2; rNcor=8; rlogoDP=8; rNIcor=6; rNsEucl=3; rSSD=2; rNSW=2; rank_mean=4.429; match_rank=3 a 0 0 0 0 0 0 0 5410 429 59 74 0 8098 502 2092 1808 1602 1121 3278 434 c 0 0 0 0 0 0 0 96 0 0 147 7621 1 4202 3235 2510 975 398 2056 6469 g 0 0 0 0 0 0 0 2563 7170 8143 989 533 57 2738 1688 2173 533 6658 1391 363 t 0 0 0 0 0 0 0 174 644 41 7033 89 87 801 1228 1752 5133 66 1518 977
MA0141.2_shift1 (Esrrb)	0.902	0.481	9.026	0.473	0.915	0.918	0.943	3	7	4	7	4	3	4	4.571	4	; oligos_6nt_mkv3_m2 versus MA0141.2 (Esrrb); m=4/12; ncol2=12; w=8; offset=-4; strand=D; shift=1; score= 4.5714; -rgsyCAAGGTCA------- ; cor=0.902; Ncor=0.481; logoDP=9.026; NIcor=0.473; NsEucl=0.915; SSD=0.918; NSW=0.943; rcor=3; rNcor=7; rlogoDP=4; rNIcor=7; rNsEucl=4; rSSD=3; rNSW=4; rank_mean=4.571; match_rank=4 a 0 1055 673 403 260 312 3347 3590 33 12 180 9 3478 0 0 0 0 0 0 0 c 0 801 832 1212 1230 2653 32 2 2 11 43 3394 21 0 0 0 0 0 0 0 g 0 984 1352 1212 449 630 248 60 3597 3622 243 167 128 0 0 0 0 0 0 0 t 0 773 767 807 1702 51 27 6 29 16 3192 85 26 0 0 0 0 0 0 0
MA0592.1_shift4 (ESRRA)	0.822	0.685	9.380	0.666	0.904	1.828	0.909	7	2	3	2	8	9	9	5.714	5	; oligos_6nt_mkv3_m2 versus MA0592.1 (ESRRA); m=5/12; ncol2=11; w=10; offset=-1; strand=D; shift=4; score= 5.7143; ----yCAAGGTCAcm----- ; cor=0.822; Ncor=0.685; logoDP=9.380; NIcor=0.666; NsEucl=0.904; SSD=1.828; NSW=0.909; rcor=7; rNcor=2; rlogoDP=3; rNIcor=2; rNsEucl=8; rSSD=9; rNSW=9; rank_mean=5.714; match_rank=5 a 0 0 0 0 17 18 200 198 0 0 6 0 197 23 70 0 0 0 0 0 c 0 0 0 0 118 174 2 0 0 0 0 205 1 108 54 0 0 0 0 0 g 0 0 0 0 11 15 6 10 203 207 22 3 10 44 40 0 0 0 0 0 t 0 0 0 0 62 1 0 0 5 1 180 0 0 33 44 0 0 0 0 0
MA0160.1_shift6 (NR4A2)	0.854	0.621	7.578	0.622	0.898	1.342	0.916	5	3	7	3	11	5	6	5.714	6	; oligos_6nt_mkv3_m2 versus MA0160.1 (NR4A2); m=6/12; ncol2=8; w=8; offset=1; strand=D; shift=6; score= 5.7143; ------aAGGTCAc------ ; cor=0.854; Ncor=0.621; logoDP=7.578; NIcor=0.622; NsEucl=0.898; SSD=1.342; NSW=0.916; rcor=5; rNcor=3; rlogoDP=7; rNIcor=3; rNsEucl=11; rSSD=5; rNSW=6; rank_mean=5.714; match_rank=6 a 0 0 0 0 0 0 8 13 0 3 2 0 14 3 0 0 0 0 0 0 c 0 0 0 0 0 0 1 0 0 0 2 13 0 8 0 0 0 0 0 0 g 0 0 0 0 0 0 3 1 13 11 0 0 0 2 0 0 0 0 0 0 t 0 0 0 0 0 0 1 0 1 0 10 1 0 0 0 0 0 0 0 0
MA0072.1_shift0 (RORA_2)	0.838	0.471	10.296	0.463	0.900	1.622	0.910	6	9	2	8	9	7	8	7.000	7	; oligos_6nt_mkv3_m2 versus MA0072.1 (RORA_2); m=7/12; ncol2=14; w=9; offset=-5; strand=D; shift=0; score= 7; wwwAwbTAGGTCAr------ ; cor=0.838; Ncor=0.471; logoDP=10.296; NIcor=0.463; NsEucl=0.900; SSD=1.622; NSW=0.910; rcor=6; rNcor=9; rlogoDP=2; rNIcor=8; rNsEucl=9; rSSD=7; rNSW=8; rank_mean=7.000; match_rank=7 a 9 17 15 35 23 2 0 28 0 0 0 0 36 15 0 0 0 0 0 0 c 8 2 0 1 0 12 0 0 0 0 0 36 0 6 0 0 0 0 0 0 g 8 7 3 0 0 13 0 8 36 36 0 0 0 10 0 0 0 0 0 0 t 11 10 18 0 13 9 36 0 0 0 36 0 0 5 0 0 0 0 0 0
MA0504.1_shift5 (NR2C2)	0.797	0.585	6.029	0.552	0.911	1.916	0.913	9	5	10	5	6	10	7	7.429	8	; oligos_6nt_mkv3_m2 versus MA0504.1 (NR2C2); m=8/12; ncol2=15; w=11; offset=0; strand=D; shift=5; score= 7.4286; -----mgrGGTCArAGGTCA ; cor=0.797; Ncor=0.585; logoDP=6.029; NIcor=0.552; NsEucl=0.911; SSD=1.916; NSW=0.913; rcor=9; rNcor=5; rlogoDP=10; rNIcor=5; rNsEucl=6; rSSD=10; rNSW=7; rank_mean=7.429; match_rank=8 a 0 0 0 0 0 129 82 193 0 10 3 6 343 187 324 10 11 0 9 290 c 0 0 0 0 0 126 70 6 8 3 0 309 0 0 0 0 0 27 315 0 g 0 0 0 0 0 90 221 195 366 355 79 54 48 208 71 385 336 89 35 92 t 0 0 0 0 0 50 22 1 21 27 313 26 4 0 0 0 48 279 36 13
MA0112.2_shift2 (ESR1)	0.809	0.445	4.397	0.450	0.915	1.754	0.920	8	10	11	10	5	8	5	8.143	9	; oligos_6nt_mkv3_m2 versus MA0112.2 (ESR1); m=9/12; ncol2=20; w=11; offset=-3; strand=D; shift=2; score= 8.1429; --vkscmaGGtCAcccTGaC ; cor=0.809; Ncor=0.445; logoDP=4.397; NIcor=0.450; NsEucl=0.915; SSD=1.754; NSW=0.920; rcor=8; rNcor=10; rlogoDP=11; rNIcor=10; rNsEucl=5; rSSD=8; rNSW=5; rank_mean=8.143; match_rank=9 a 0 0 122 107 64 83 134 308 36 19 33 4 398 58 63 64 32 21 305 10 c 0 0 120 80 173 229 232 28 8 18 41 394 13 250 276 258 19 22 106 436 g 0 0 154 164 149 65 47 89 387 420 91 53 27 107 53 97 8 426 31 12 t 0 0 71 117 82 93 57 48 43 18 310 24 37 60 83 56 416 6 33 17
MA0505.1_shift0 (Nr5a2)	0.790	0.494	7.874	0.460	0.898	2.077	0.896	10	6	6	9	10	11	11	9.000	10	; oligos_6nt_mkv3_m2 versus MA0505.1 (Nr5a2); m=10/12; ncol2=15; w=10; offset=-5; strand=D; shift=0; score= 9; ragtTCAAGGyCAgs----- ; cor=0.790; Ncor=0.494; logoDP=7.874; NIcor=0.460; NsEucl=0.898; SSD=2.077; NSW=0.896; rcor=10; rNcor=6; rlogoDP=6; rNIcor=9; rNsEucl=10; rSSD=11; rNSW=11; rank_mean=9.000; match_rank=10 a 645 985 276 122 71 8 1685 1679 39 0 169 0 1437 271 249 0 0 0 0 0 c 224 170 198 378 351 1616 14 0 0 0 584 1568 20 345 693 0 0 0 0 0 g 634 336 990 366 23 74 0 23 1663 1702 61 12 90 740 454 0 0 0 0 0 t 199 211 238 836 1257 4 3 0 0 0 888 122 155 346 306 0 0 0 0 0
MA0066.1_shift5 (PPARG)	0.766	0.421	6.837	0.424	0.905	2.176	0.901	12	12	9	11	7	12	10	10.429	11	; oligos_6nt_mkv3_m2 versus MA0066.1 (PPARG); m=11/12; ncol2=20; w=11; offset=0; strand=D; shift=5; score=10.4286; -----sTrGGTCAcsgTGAC ; cor=0.766; Ncor=0.421; logoDP=6.837; NIcor=0.424; NsEucl=0.905; SSD=2.176; NSW=0.901; rcor=12; rNcor=12; rlogoDP=9; rNIcor=11; rNsEucl=7; rSSD=12; rNSW=10; rank_mean=10.429; match_rank=11 a 0 0 0 0 0 3 3 19 0 1 0 2 26 5 5 4 1 2 22 1 c 0 0 0 0 0 8 0 0 1 0 1 23 1 15 7 2 0 5 5 27 g 0 0 0 0 0 14 0 9 27 26 4 3 0 4 10 18 2 20 0 0 t 0 0 0 0 0 3 25 0 0 1 23 0 1 4 6 4 25 1 1 0
MA0089.1_rc_shift9 (NFE2L1::MafG_rc)	0.787	0.429	0.090	-0.133	0.860	1.403	0.883	11	11	12	12	12	6	12	10.857	12	; oligos_6nt_mkv3_m2 versus MA0089.1_rc (NFE2L1::MafG_rc); m=12/12; ncol2=6; w=6; offset=4; strand=R; shift=9; score=10.8571; ---------GTCATs----- ; cor=0.787; Ncor=0.429; logoDP=0.090; NIcor=-0.133; NsEucl=0.860; SSD=1.403; NSW=0.883; rcor=11; rNcor=11; rlogoDP=12; rNIcor=12; rNsEucl=12; rSSD=6; rNSW=12; rank_mean=10.857; match_rank=12 a 0 0 0 0 0 0 0 0 0 6 0 1 34 0 6 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 2 0 32 0 3 10 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 26 0 0 0 2 11 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 34 1 0 29 7 0 0 0 0 0