; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_links.txt
; Input files
;	input	/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	18	18	9	6	48	1	0	3	2	0	4	54	55	3	6	36	14	13
c	13	13	7	6	2	0	0	0	3	0	51	0	0	3	36	9	12	9
g	12	13	14	30	4	0	0	52	2	55	0	0	0	1	5	6	11	13
t	12	11	25	13	1	54	55	0	48	0	0	1	0	48	8	4	18	20
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m1.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m1_rc.png
a	12	13	6	4	5	0	0	2	0	37	1	41	41	0	5	26	9	15
c	14	1	7	2	4	0	0	0	42	1	40	0	0	1	24	6	16	8
g	7	8	27	5	31	0	0	39	0	3	0	0	1	3	9	3	9	7
t	9	20	2	31	2	42	42	1	0	1	1	1	0	38	4	7	8	12
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m2.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m2_rc.png
a	12	17	7	4	46	0	0	1	1	0	4	51	53	0	29	25	12	13
c	16	12	5	7	3	0	0	0	4	0	45	0	0	2	6	5	12	9
g	13	13	9	31	2	0	0	51	0	53	1	1	0	5	9	14	12	11
t	12	11	32	11	2	53	53	1	48	0	3	1	0	46	9	9	17	20
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m3.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m3_rc.png
a	14	9	6	4	40	0	0	0	3	6	3	46	46	1	5	24	12	9
c	13	13	7	6	3	0	0	0	35	2	43	0	0	2	31	9	12	10
g	10	12	9	31	2	0	0	43	2	35	0	0	0	3	6	7	13	13
t	9	12	24	5	1	46	46	3	6	3	0	0	0	40	4	6	9	14
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m4.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m4_rc.png
a	31	15	18	11	69	0	0	2	0	74	0	79	79	1	30	14
c	15	19	7	10	2	0	0	1	79	1	74	0	0	57	17	28
g	16	23	9	48	7	0	0	74	0	4	0	0	0	5	13	11
t	17	22	45	10	1	79	79	2	0	0	5	0	0	16	19	26
//
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m5.png
; logo file:/workspace/rsat/public_html/tmp/www-data/2015/11/03/peak-motifs.2015-11-03.065540_2015-11-03.065540_cr9ytx/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m5_rc.png
; Host name	rsat-tagc
; Job started	2015-11-03.065657
; Job done	2015-11-03.065701
; Seconds	0.35
;	user	0.35
;	system	0.08
;	cuser	3.45
;	csystem	0.31
