Statistics for Bioinformatics - Contents

Book

The book associated to this course will be available in 2009.

Statistics for Bioinformatics
Jacques Van Helden
Publisher: Oxford University Press
ISBN13: 9780199226757
ISBN10: 019922675X
Hardback, 400 pages, Also available: paper
Aug 2009, Not Yet Published due Aug 15 2009

Slides

Formats

pdf: one slide per page. Convenient for visualizing the slides on a computer screen
6spp: also pdf, but in handout format, 6 slides per page. convenient for printing

Slides per chapter

Note: The organization of the slides differs from that of the book.

Slides are grouped according to the general organization of introductory courses to statistics and probabilities.
In contrast, the book is organized to treat subjects in a problem-driven way, as much as possible.

Slides (in english)
Chapter	Screen	Print (6spp)
Content of the course	pdf	6spp
Introduction	pdf	6spp
Study cases - DNA chips	pdf	6spp
Elements of probabilities	pdf	6spp
Univariate analysis
Descriptive statistics	pdf	6spp
Statistical inference
*Theoretical distributions*	pdf	6spp
*Sampling and estimation*	pdf	6spp
*Fitting*	pdf	6spp
*Hypothesis testing*	pdf	6spp
Conformity tests	pdf	6spp
Homogeneity	pdf	6spp
Significance	pdf	6spp
Goodness of fit	pdf	6spp
Multiple testing corrections	pdf	6spp
Multivariate analysis
Introduction to multivariate analysis	pdf	6spp
Study cases	pdf	6spp
Normalization of microarray data	pdf	6spp
Correlation analysis	pdf	6spp
Regression analysis
Similarity and dissimilarity metrics	pdf	6spp
Clustering	pdf	6spp
Visualization	pdf	6spp
*Principal component analysis*
*Multidimensional scaling*
Discriminant analysis	pdf	6spp
Summary	pdf	6spp
Analysis of microarray data
Exercises	pdf
Solutions to the exercises	pdf