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RSAT
NeAT

Regulatory
Sequence
Analysis
Tools

New programs

Most popular tools

retrieve sequence retrieve EnsEMBL seq oligo-analysis (words) matrix-scan (quick)

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Genomes and genes

supported organisms gene information infer operons get orthologs random gene selection

Sequence tools

retrieve sequence retrieve EnsEMBL seq. purge sequence convert sequence random sequences

Matrix tools

convert matrix compare matrices

matrix distrib matrix quality

Build control sets

random gene selection random sequence random genome fragments

Motif discovery

strings oligo-analysis (words) oligo-diff (words) dyad-analysis (spaced pairs) pattern assembly strings with positional biais position-analysis (words) local-word-analysis (word and spaced pairs) matrices info-gibbs consensus

Pattern matching

matrices matrix-scan (full options) matrix-scan (quick)

strings dna-pattern genome-scale dna-pattern

Comparative genomics

get orthologs footprint-discovery

NGS - ChIP-seq

peak-motifs (ChIP-seq analysis) fetch-sequences from UCSC random genome fragments

Conversion/Utilities

Set comparisons / enrichment compare classes/clusters Stats Frequency distribution sequences convert sequence matrices convert matrix background models convert background sequence probability create background

features convert features compare features

Drawing

feature map XY graph

SOAP Web services

Introduction Documentation WSDL Clients Taverna workflows

Doc and help

Map of the tools Introduction Tutorials Course Contact & Forum

Information

People Publications Citing RSAT Distribution Credits Data Links

Jacques van Helden