RSA-tools - Network Analysis Tools - People

Project leader
Jacques van Helden Jacques van Helden
Project leader (1997-now) 		Development, evaluation and applications of algorithms for the analysis of regulatory sequences and biological networks.
Team (sorted alphabetically)
Sylvain Brohee Sylvain Brohée
PhD student 2005-2008
 Network analysis tools.
Evaluation of graph-based clustering algorithms.
Protein interaction and regulatory networks.
Jaime Castro Jaime Castro
M2 student (2013-2014) 		matrix-clustering.
Didier Croes Didier Croes
PhD student (2001-2006), postdoc (2010-2011). 		Analysis of metabolic networks.
Matthieu Defrance Matthieu Defrance
Postdoc (2007- 2009)
 Algorithms for motif discovery.
Matrix-based pattern matching.
Detection of cis-regulatory modules.
Karoline Faust Karoline Faust
PhD student (2005-2010) 		Analysis of metabolic networks.
Rekin's Janky Rekin's Janky
PhD 2004-2007
 Discovery of phylogenetic footprints in bacterial promoters.
Gipsi Lima Mendez Gipsi Lima Mendez

PhD (2005-2008)
Postdoc (2008-2009) 		Algorithms for fuzzy clustering on graphs.
Alejandra Medina-Rivera
PhD Student
(UNAM, Mexico / ULB, Belgium) (2007-2011) 		Evaluation of PSSM quality.
Evolution of bacterial regulation.
Olivier Sand Olivier Sand
Postdoc (2004-2009)
 Evaluation of motif discovery algorithms.
Implementation of the Web services.
Morgane Thomas-Chollier Morgane Thomas-Chollier
PhD student 2005-2008
Postdoc 2008-2009
Now: assistant professor at the Ecole Normale Supérieure de Paris (France) 		Matrix-based pattern matching.
Matrix score distributions.
Detection of cis-regulatory modules.
Jean Valery Turatsinze Jean-Valéry Turatsinze
PhD student (2006-2009) 		Matrix-based pattern mathing.
Detection of cis-regulatory modules.
Eric Vervisch Eric Vervisch
Research fellow (2007-2008) 		Design of Taverna workflows for the analysis of cis-regulatory elements and molecular networks.