AC  LexA.2nt_upstream-noorf-ovlp-2str.20_m1
XX
ID  LexA
XX
DE  wwaCTGtAtawAwaamCAGy
PO       A     C     G     T
1       15     4     3    12
2       12     4     1    17
3       25     2     5     2
4        0    33     0     1
5        0     0     0    34
6        0     0    34     0
7        1     4     6    23
8       28     3     1     2
9        0     5     4    25
10      26     1     5     2
11      14     2     6    12
12      28     0     2     4
13      16     6     1    11
14      20     3     4     7
15      14     7     4     9
16      17    13     1     3
17       0    33     1     0
18      33     0     0     1
19       3     0    31     0
20       2     9     5    18
XX
BA  34 sequences
XX
BS  ATACTGTATATAAAAACAGT; site_0; 1; 20; 0; p
BS  TTACTGTATATAAAACCAGT; site_1; 1; 20; 0; p
BS  TTACTGTATAAATAAACAGT; site_2; 1; 20; 0; p
BS  ATACTGGATAAAAAAACAGT; site_3; 1; 20; 0; p
BS  CTACTGTATATAAAAACAGT; site_4; 1; 20; 0; p
BS  ATACTGTATAAAATCACAGT; site_5; 1; 20; 0; p
BS  CAACTGTATATAAATACAGT; site_6; 1; 20; 0; p
BS  TCACTGTATAAATAAACAGC; site_7; 1; 20; 0; p
BS  TAACTGTATATACACCCAGG; site_8; 1; 20; 0; p
BS  TACCTGTATAAATAACCAGT; site_9; 1; 20; 0; p
BS  ACACTGGATAGATAACCAGC; site_10; 1; 20; 0; p
BS  ATGCTGGATAGATATCCAGC; site_11; 1; 20; 0; p
BS  AATCTGTATATATACCCAGC; site_12; 1; 20; 0; p
BS  ATACTGTACACAATAACAGT; site_13; 1; 20; 0; p
BS  TTGCTGTATATACTCACAGC; site_14; 1; 20; 0; p
BS  TTACTGTATGGATGTACAGT; site_15; 1; 20; 0; p
BS  ATACTGTATAAACAGCCAAT; site_16; 1; 20; 0; p
BS  TAACTGGATAATCATACAGT; site_17; 1; 20; 0; p
BS  ATACTGTATGAGCATACAGT; site_18; 1; 20; 0; p
BS  CAACTGGATAAAATTACAGG; site_19; 1; 20; 0; p
BS  TGACTGTATAAAACCACAGC; site_20; 1; 20; 0; p
BS  ATACTGTACGTATCGACAGT; site_21; 1; 20; 0; p
BS  TTGCTGTATGGATTAACAGG; site_22; 1; 20; 0; p
BS  ATACTGTATATTCATTCAGG; site_23; 1; 20; 0; p
BS  TACCTGTATATATCATCAGT; site_24; 1; 20; 0; p
BS  AAACTGCACAATAAACCAGA; site_25; 1; 20; 0; p
BS  CAACTGATTAAAAACCCAGC; site_26; 1; 20; 0; p
BS  TAACTGTCGATAAGCGCAGC; site_27; 1; 20; 0; p
BS  GCACTGTATAAAAATCCTAT; site_28; 1; 20; 0; p
BS  ACGCTGCCCTGAAAGCCAGG; site_29; 1; 20; 0; p
BS  ATACTGTGCCATTTTTCAGT; site_30; 1; 20; 0; p
BS  AAGCTGGCGTTGATGCCAGC; site_31; 1; 20; 0; p
BS  GATCTGCTGGCAAGAACAGA; site_32; 1; 20; 0; p
BS  GTATTGCAGAGAGGACGAAT; site_33; 1; 20; 0; p
CC  program: meme
CC  matrix.nb: 1
CC  command: meme /Users/amedina/work_area/Regulon_matrix_eval/data/Sites_FNA_NR/LexA.19.fna -dna -mod oops -revcomp -text -nostatus -minw 20 -maxw 20 -bfile /Users/amedina/work_area/Regulon_matrix_eval/data/bg_freqs/2nt_upstream-noorf_Escherichia_coli_K12-ovlp-2str.meme_bg
CC  sites: 34
CC  meme.llr: 430
CC  meme.E-value: 2.0e-088
CC  matrix.nb: 1
CC  sites: 34
CC  consensus.strict: ataCTGtAtaaAaaacCAGt
CC  consensus.strict.rc: ACTGGTTTTTTATACAGTAT
CC  consensus.IUPAC: wwaCTGtAtawAwaamCAGy
CC  consensus.IUPAC.rc: RCTGKTTWTWTATACAGTWW
CC  consensus.regexp: [at][at]aCTGtAta[at]A[at]aa[ac]CAG[ct]
CC  consensus.regexp.rc: [AG]CTG[GT]TT[AT]T[AT]TATACAGT[AT][AT]
XX
//
