RSAT - footprint-discovery result

Analysis: lexA Gammaproteobacteria Escherichia_coli_GCF_000005845.2_ASM584v2 taxfreq (21/03/2018 14:25)

footprint-discovery  -v 1 -nodie -org Escherichia_coli_GCF_000005845.2_ASM584v2 -taxon Gammaproteobacteria -genes $RSAT/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/lexA_genes -sep_genes -lth occ 1 -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -filter -bg_model taxfreq -task query_seq,filter_dyads,orthologs,ortho_seq,purge,dyads,maps,gene_index,index -o $RSAT/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ
Program version       	1.116
Working directory     	/space23/rsat/public_html
Computer name         	sinik
Query organism        	Escherichia_coli_GCF_000005845.2_ASM584v2
Reference taxon       	Gammaproteobacteria
Query gene            	lexA
Background model      	taxfreq
Dyad filtering ON

Log

lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_log.txt

Query genes

lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_query_genes.tab

Query sequence

lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_query_seq.fasta

Filter dyads

lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_filter_dyads.tab

Orthologs

lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_bbh.tab

ortho sequences

lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_seq.fasta