; Input files
;	bg_model     	/space23/rsat/public_html/data/taxon_frequencies/Gammaproteobacteria/dyads_3nt_sp0-20_upstream-noorf_Gammaproteobacteria-noov-2str.freq
;	genes        	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/lexA_genes
; Output files
;	count_PSSM_tf	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_dyads_3nt_sp0-20-2str-noov_taxfreq_sig0_pssm_count_matrices.tf
;	map_pssm     	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_dyads_3nt_sp0-20-2str-noov_taxfreq_sig0_pssm.png
;	main_log     	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_bg_taxfreq_log.txt
;	purged       	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_seq_purged.fasta
;	main_index_table	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_bg_taxfreq_result_table.tab
;	map_dyads    	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_dyads_3nt_sp0-20-2str-noov_taxfreq_sig0.png
;	sig_PSSM     	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_dyads_3nt_sp0-20-2str-noov_taxfreq_sig0_pssm_sig_matrices.tf
;	seq_notclean 	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_seq_notclean.fasta
;	log          	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_log.txt
;	seq          	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_seq.fasta
;	main_index_file	Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_bg_taxfreq_result_index.html
;	count_PSSM_txt	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_dyads_3nt_sp0-20-2str-noov_taxfreq_sig0_pssm_count_matrices.txt
;	asmb         	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_dyads_3nt_sp0-20-2str-noov_taxfreq_sig0.asmb
;	bbh          	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_bbh.tab
;	main_index   	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_bg_taxfreq_result_index.html
;	genes        	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_query_genes.tab
;	dyad_prefix  	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_dyads_3nt_sp0-20-2str-noov_taxfreq_sig0
;	filter_dyads 	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_filter_dyads.tab
;	main_table_file	Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_bg_taxfreq_result_table.tab
;	dyads_html   	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_dyads_3nt_sp0-20-2str-noov_taxfreq_sig0.html
;	index        	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_index.html
;	orthologs    	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_bbh.tab
;	main_prefix  	Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_bg_taxfreq
;	dyads        	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_ortho_dyads_3nt_sp0-20-2str-noov_taxfreq_sig0.tab
;	prefix       	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq
;	query_seq    	/space23/rsat/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/Gammaproteobacteria/Escherichia_coli_GCF_000005845.2_ASM584v2/lexA/lexA_Escherichia_coli_GCF_000005845.2_ASM584v2_Gammaproteobacteria_taxfreq_query_seq.fasta
; footprint-discovery  -v 1 -nodie -org Escherichia_coli_GCF_000005845.2_ASM584v2 -taxon Gammaproteobacteria -genes $RSAT/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ/lexA_genes -sep_genes -lth occ 1 -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -filter -bg_model taxfreq -task query_seq,filter_dyads,orthologs,ortho_seq,purge,dyads,maps,gene_index,index -o $RSAT/public_html/tmp/apache/2018/03/21/footprint-discovery_Gammaproteobacteria_Escherichia_coli_GCF_000005845.2_ASM584v2_lexA_2018-03-21.142439_2018-03-21.142439_C9MNSJ
; Program version       	1.116
; Working directory     	/space23/rsat/public_html
; Computer name         	sinik
; Query organism        	Escherichia_coli_GCF_000005845.2_ASM584v2
; Reference taxon       	Gammaproteobacteria
; Query gene            	lexA
; Background model      	taxfreq
; Dyad filtering ON
; Host name	sinik
; Job started	2018-03-21.142505
; Job done	2018-03-21.143159
; Seconds	25.14
;	user	25.14
;	system	0.17
;	cuser	329.59
;	csystem	56.67
