RSA-tools - pathways-from-genome result

Analysis: Access by organism (06/09/2012 05:34)

nb organism name MicroCyc frame NCBI TAXID dir log CDS genes > EC ECs > gene genes operons directons
1Kytococcus_sedentarius_DSM_20547_uid59071478801 [dir] [log]2579588 820 2607 1638 888
2Haloterrigena_turkmenica_DSM_5511_uid43501543526 [dir] [log]5138588 820 5175 4133 2054
3Geodermatophilus_obscurus_DSM_43160_uid43725526225 [dir] [log]4835904 2182 4867 3231 1646
4Xylanimonas_cellulosilytica_DSM_15894_uid41935446471 [dir] [log]3468972 2870 3504 2045 1064
5Conexibacter_woesei_DSM_14684_uid43467469383 [dir] [log]59391091 4035 5962 3062 1898
6Pedobacter_heparinus_DSM_2366_uid59111485917 [dir] [log]42771091 4035 4304 2305 1146
7Stigmatella_aurantiaca_DW4_3_1_uid63257378806 [dir] [log]83771091 4035 8407 5467 2888
8Delftia_acidovorans_SPH_1_uid58703398578 [dir] [log]60651091 4035 6135 3712 1744
9Rhodobacter_sphaeroides_2_4_1_uid57653RHIME324-150272943 [dir] [log]4267927 1859 4293 2495 1234
10Stigmatella_aurantiaca_DW4_3_1_uid158509378806 [dir] [log]83771249 4545 8407 5467 2888
11Beutenbergia_cavernae_DSM_12333_uid59047471853 [dir] [log]42221286 4890 4250 2459 1426
12Brachybacterium_faecium_DSM_4810_uid58649446465 [dir] [log]30931306 5641 3126 1996 1014
13Acinetobacter_ADP1_uid61597ACIAD31-15062977 [dir] [log]33321408 6577 3382 2156 989
14Agrobacterium_tumefaciens_C58_uid57865AERS4332-150176299 [dir] [log]53801459 7583 5322 3467 1675
15Agrobacterium_tumefaciens_C58_uid57865AERS4332-150176299 [dir] [log]53801459 7583 5322 3467 1675
16Archaeoglobus_fulgidus_DSM_4304_uid57717ARCFU244-150224325 [dir] [log]24451500 8017 2466 1169 732
17Bacillus_anthracis__Ames_Ancestor__uid58083BACAA57-150261594 [dir] [log]55091549 8815 5595 3832 1620
18Bacillus_cereus_ATCC_14579_uid57975BACCR50-150226900 [dir] [log]52801571 9820 5381 3746 1505
19Bacillus_subtilis_168_uid57675BACSU7-150224308 [dir] [log]42011623 10308 4289 2648 1143
20Bacteroides_thetaiotaomicron_VPI_5482_uid62913BACTN1027-150226186 [dir] [log]48411676 10598 4899 2842 1189
21Bifidobacterium_longum_NCC2705_uid57939BIFLO746-150206672 [dir] [log]17541681 10792 1798 1332 550
22Borrelia_burgdorferi_B31_uid57581BORBU23-150224326 [dir] [log]16651685 10879 1653 811 458
23Bordetella_pertussis_Tohama_I_uid57617BORPE73-150257313 [dir] [log]34611708 11534 3478 2151 1054
24Bradyrhizobium_japonicum_USDA_110_uid57599BRAJA100-150224911 [dir] [log]83421745 12811 8306 5480 2742
25Burkholderia_pseudomallei_K96243_uid57733BURPS90-150272560 [dir] [log]57531765 13699 5771 3784 1584
26Campylobacter_jejuni_NCTC_11168_uid57587CAMJE46-150192222 [dir] [log]16481771 13875 1670 631 354
27Caulobacter_crescentus_CB15_uid57891CAUCN1083-150190650 [dir] [log]37621776 14040 3794 2487 1296
28Chlamydia_trachomatis_D_UW_3_CX_uid57637CHLTR15-150272561 [dir] [log]9201778 14082 938 554 268
29Clostridium_acetobutylicum_ATCC_824_uid57677CLOAB39-150272562 [dir] [log]38721790 14662 3926 2413 899
30Corynebacterium_glutamicum_ATCC_13032_uid57905CORGL79-150196627 [dir] [log]30181801 15277 3070 2015 987
31Corynebacterium_glutamicum_ATCC_13032_uid61611CORGL79-150196627 [dir] [log]30821801 15277 3134 1995 1014
32Desulfovibrio_vulgaris_Hildenborough_uid57645DESVH800-150882 [dir] [log]35611804 15652 3617 2152 1012
33Flavobacterium_psychrophilum_JIP02_86_uid61627FLAPJ1034-150402612 [dir] [log]24371809 15907 2462 1551 613
34Flavobacterium_psychrophilum_JIP02_86_uid19979FLAPJ1034-150402612 [dir] [log]24371809 15907 2462 1551 613
35Francisella_tularensis_SCHU_S4_uid57589FRATT151-150177416 [dir] [log]16291810 16034 1598 891 447
36Fusobacterium_nucleatum_ATCC_25586_uid57885FUSNN162-150190304 [dir] [log]20881827 16469 2119 1069 399
37Haemophilus_influenzae_Rd_KW20_uid57771HAEIN42-15071421 [dir] [log]16821834 16565 1727 1037 458
38Halobacterium_NRC_1_uid57769HALSA247-15064091 [dir] [log]26471841 16767 2671 1804 1083
39Helicobacter_pylori_26695_uid57787HELPY117-15085962 [dir] [log]15981843 16801 1616 751 362
40Hyperthermus_butylicus_DSM_5456_uid57755HYPBU249-150415426 [dir] [log]16281849 16828 1653 1170 628
41Lactococcus_lactis_Il1403_uid57671LACLA780-150272623 [dir] [log]23461857 17026 2399 1549 444
42Lactobacillus_plantarum_WCFS1_uid62911LACPL528-150220668 [dir] [log]30821863 17110 3124 1945 803
43Leptospira_interrogans_serovar_Lai_56601_uid57881LEPIN77-150189518 [dir] [log]37271874 17508 3688 2304 1120
44Listeria_monocytogenes_EGD_e_uid61583LISIN395-150169963 [dir] [log]28711875 17595 2929 1656 608
45Methanosarcina_acetivorans_C2A_uid57879METAC235-150188937 [dir] [log]45651890 18099 4523 3486 1532
46Methanospirillum_hungatei_JF_1_uid58181METHJ260-150323259 [dir] [log]31561897 18137 3196 1877 1024
47Methanocaldococcus_jannaschii_DSM_2661_uid57713METJA13-150243232 [dir] [log]17961904 18243 1814 1087 531
48Methanopyrus_kandleri_AV19_uid57883METKA257-150190192 [dir] [log]17121904 18483 1725 917 574
49Methanothermobacter_thermautotrophicus_Delta_H_uid57877METTH12-150187420 [dir] [log]18981905 18729 1916 947 482
50Moorella_thermoacetica_ATCC_39073_uid58051MOOTA546-150264732 [dir] [log]24881908 18758 2515 1423 390
51Mycobacterium_smegmatis_MC2_155_uid57701MYCPA174-150246196 [dir] [log]67421938 19448 6768 3780 2426
52Mycoplasma_pneumoniae_M129_uid57709MYCPN19-150272634 [dir] [log]7141938 19468 727 330 130
53Mycobacterium_tuberculosis_H37Rv_uid57777MYCTU4-15083332 [dir] [log]40281941 19823 4026 2420 1350
54Neisseria_gonorrhoeae_FA_1090_uid57611NEIGO34-150242231 [dir] [log]20271941 19823 2068 1402 593
55Neisseria_meningitidis_MC58_uid57817NEIMB30-150122586 [dir] [log]20881943 19933 2133 1432 550
56Nitrosopumilus_maritimus_SCM1_uid58903NITMA1198-150436308 [dir] [log]18211943 19943 1844 1105 728
57Pseudomonas_aeruginosa_PAO1_uid57945PSEPA26-150208964 [dir] [log]55961968 20546 5645 3563 1649
58Pseudomonas_putida_KT2440_uid57843PSEPK48-150160488 [dir] [log]53751985 20909 5445 3407 1689
59Pyrobaculum_aerophilum_IM2_uid57727PYRAE264-150178306 [dir] [log]26291985 21246 2649 1492 978
60Pyrococcus_furiosus_DSM_3638_uid57873PYRFU91-150186497 [dir] [log]21471988 21592 2173 1077 678
61Thermococcus_kodakarensis_KOD1_uid58225PYRKO270-15069014 [dir] [log]2331404 561 2359 1217 725
62Rhodobacter_sphaeroides_2_4_1_uid57653RHIME324-150272943 [dir] [log]4267927 1859 4293 2495 1234
63Rhodospirillum_rubrum_ATCC_11170_uid57655RHOP2323-150269796 [dir] [log]38631028 3101 3905 2496 1100
64Rickettsia_prowazekii_Madrid_E_uid61565RICPR22-150272947 [dir] [log]8601038 3335 862 597 215
65Salmonella_enterica_serovar_Typhimurium_LT2_uid57799SALTY29-15099287 [dir] [log]45501299 4585 4628 2870 1321
66Shigella_dysenteriae_Sd197_uid58213SHISD141-150300267 [dir] [log]45261354 5214 4371 2951 1490
67Streptomyces_coelicolor_A3_2__uid57801STRCO55-150100226 [dir] [log]81781525 6707 8193 5669 2953
68Streptococcus_pneumoniae_R6_uid57859STRR6209-150171101 [dir] [log]20671545 6966 2043 1098 391
69Sulfolobus_solfataricus_P2_uid57721SULSO11-150273057 [dir] [log]30031564 7432 3023 1799 1107
70Thermodesulfovibrio_yellowstonii_DSM_11347_uid59257THE11421-150289376 [dir] [log]20581580 7869 2083 696 401
71Thermoplasma_acidophilum_DSM_1728_uid61573THEAC272-150273075 [dir] [log]15091589 8147 1531 992 566
72Thermanaerovibrio_acidaminovorans_DSM_6589_uid41925THEAS1024-150525903 [dir] [log]17631605 8570 1797 714 324
73Thermotoga_maritima_MSB8_uid57723THEMA24-150243274 [dir] [log]18831617 8871 1907 612 389
74Thermofilum_pendens_Hrk_5_uid58563THEPD271-150368408 [dir] [log]19031619 9050 1927 1119 672
75Thermus_thermophilus_HB8_uid58223THET8762-150300852 [dir] [log]22601633 9573 2289 957 621
76Vibrio_cholerae_O1_biovar_El_Tor_N16961_uid57623VIBCH43-150243277 [dir] [log]38591645 9787 3956 2508 1275
77Vibrio_fischeri_ES114_uid58163VIBF1198-150312309 [dir] [log]38421669 10170 3970 2581 1237
78Yersinia_pestis_CO92_uid57621YERPE3-150214092 [dir] [log]40911685 10476 4034 2682 1129
79Chloroflexus_aurantiacus_J_10_fl_uid57657324602 [dir] [log]38781685 10476 3911 2408 1028
80Chlorobium_tepidum_TLS_uid57897194439 [dir] [log]22701685 10476 2300 1393 736
81Prochlorococcus_marinus_CCMP1375_uid57995167539 [dir] [log]19081685 10476 1888 1214 727
82Aquifex_aeolicus_VF5_uid57765224324 [dir] [log]15851685 10476 1611 706 501
83Enterococcus_faecalis_V583_uid57669226185 [dir] [log]32891685 10476 3344 1862 696
84Escherichia_coli_K_12_substr__MG1655_uid57779511145 [dir] [log]43451685 10476 4398 2747 1311
85Rhodopirellula_baltica_SH_1_uid61589243090 [dir] [log]73501685 10476 7374 4317 2873
86Mycoplasma_mycoides_SC_PG1_uid58031272632 [dir] [log]10421685 10476 954 525 197
87Geobacter_sulfurreducens_PCA_uid57743243231 [dir] [log]34531685 10476 3483 1927 802
88Salinibacter_ruber_DSM_13855_uid58513309807 [dir] [log]28581685 10476 2856 2187 880
89Staphylococcus_aureus_NCTC_8325_uid5779593061 [dir] [log]29161685 10476 2970 1799 786
90Dictyoglomus_turgidum_DSM_6724_uid59177515635 [dir] [log]17691685 10476 1796 629 332
91Deinococcus_radiodurans_R1_uid57665243230 [dir] [log]31921685 10476 3224 2031 1084
92Coxiella_burnetii_RSA_493_uid57631227377 [dir] [log]18721685 10476 1892 1118 640
93Mesoplasma_florum_L1_uid58055265311 [dir] [log]7071685 10476 717 335 102
94Xanthomonas_campestris_ATCC_33913_uid57887190485 [dir] [log]42041685 10476 4138 2720 1231
95Clostridium_botulinum_A_ATCC_3502_uid61579413999 [dir] [log]36151685 10476 3663 2409 716