Regulatory Sequence Analysis Tools


Welcome to Regulatory Sequence Analysis Tools (RSAT).

RSAT
This web site provides a series of modular computer programs specifically designed for the detection of regulatory signals in non-coding sequences.

RSAT servers have been up and running since 1997. The project was initiated by Jacques van Helden, and is now pursued by the RSAT team.


Choose a server

New ! January 2015: we are in the process of re-organising our mirror servers into taxon-specific servers, to better suit the drastic increase of available genomes.
fungi
maintained by TAGC - Université Aix Marseilles, France
prokaryotes
maintained by RegulonDB - UNAM, Cuernavaca, Mexico
metazoa
maintained by platforme ABIMS Roscoff, France
protists
maintained by Ecole Normale Supérieure Paris, France
plants
maintained by Bruno Contreras Moreira, Spain
teaching
maintained by SLU Global Bioinformatics Center, Uppsala, Sweden

Citing RSAT complete suite of tools:
  • New ! Medina-Rivera A, Defrance M, Sand O, Herrmann C, Castro-Mondragon J, Delerce J, Jaeger S, Blanchet C, Vincens P, Caron C, Staines DM, Contreras-Moreira B, Artufel M, Charbonnier-Khamvongsa L, Hernandez C, Thieffry D, Thomas-Chollier M, van Helden J (2015) RSAT 2015: Regulatory Sequence Analysis Tools . Nucleic Acids Res. 2015 (Web Server issue) in press. [Full text]
  • Thomas-Chollier M, Defrance M, Medina-Rivera A, Sand O, Herrmann C, Thieffry D, van Helden J. (2011) RSAT 2011: regulatory sequence analysis tools. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W86-91. [Pubmed 21715389] [Full text]
  • Thomas-Chollier, M., Sand, O., Turatsinze, J. V., Janky, R., Defrance, M., Vervisch, E., Brohee, S. & van Helden, J. (2008). RSAT: regulatory sequence analysis tools. Nucleic Acids Res. [Pubmed 18495751] [Full text]
  • van Helden, J. (2003). Regulatory sequence analysis tools. Nucleic Acids Res. 2003 Jul 1;31(13):3593-6. [Pubmed 12824373] [Full text] [pdf]
For citing individual tools: the reference of each tool is indicated on top of their query form.

RSAT logos designed by Mauricio Guzman (http://www.altamirastudio.com/)