One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m1_shift0 (dyads_m1dyads_m1) |
 |
|
|
; dyads_m1 (dyads_m1dyads_m1); m=0 (reference); ncol1=21; shift=0; ncol=21; ssCCGCGGGCCGCGCGCGGss
; Alignment reference
a 25 29 8 10 7 6 8 11 7 4 11 8 8 7 4 1 9 7 8 33 27
c 99 87 199 192 19 213 20 42 32 199 185 15 208 13 207 16 215 27 41 111 99
g 86 104 33 33 208 18 212 186 195 39 39 215 26 214 32 221 14 203 183 73 88
t 34 24 4 9 10 7 4 5 10 2 9 6 2 10 1 6 6 7 12 27 30
|
| MA1650.1_rc_shift9 (ZBTB14_rc) |
 |
|
|
; dyads_m1 versus MA1650.1_rc (ZBTB14_rc); m=1/1; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.424463; ---------ssGTGCGCGGss
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 606.0 508.0 123.0 0.0 52.0 67.0 82.0 62.0 59.0 73.0 519.0 530.0
c 0 0 0 0 0 0 0 0 0 1239.0 1451.0 651.0 10.0 261.0 4043.0 319.0 4098.0 155.0 614.0 1555.0 1668.0
g 0 0 0 0 0 0 0 0 0 2260.0 1618.0 3674.0 37.0 4178.0 305.0 4078.0 294.0 4292.0 3525.0 1972.0 1779.0
t 0 0 0 0 0 0 0 0 0 442.0 970.0 99.0 4500.0 56.0 132.0 68.0 93.0 41.0 335.0 501.0 570.0
|