Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14.tf
		file1	1	14	5259
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m14 MA0832.1 dyads_m14dyads_m14 Tcf21 0.889 0.889 14 14 14 14 1.0000 1.0000 1.0000 R 0
dyads_m14 MA1641.1 dyads_m14dyads_m14 MYF5 0.937 0.803 14 12 12 14 0.8571 0.8571 1.0000 D 1
dyads_m14 MA1485.1 dyads_m14dyads_m14 FERD3L 0.798 0.798 14 14 14 14 1.0000 1.0000 1.0000 D 0
dyads_m14 MA1621.1 dyads_m14dyads_m14 Rbpjl 0.790 0.790 14 14 14 14 1.0000 1.0000 1.0000 D 0
dyads_m14 MA1619.1 dyads_m14dyads_m14 Ptf1a(var.2) 0.919 0.787 14 12 12 14 0.8571 0.8571 1.0000 D 1
dyads_m14 MA1618.1 dyads_m14dyads_m14 Ptf1a 0.807 0.749 14 13 13 14 0.9286 0.9286 1.0000 R 0
dyads_m14 MA0500.2 dyads_m14dyads_m14 MYOG 0.869 0.745 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m14 MA0499.2 dyads_m14dyads_m14 MYOD1 0.797 0.740 14 13 13 14 0.9286 0.9286 1.0000 D 1
dyads_m14 MA1467.1 dyads_m14dyads_m14 ATOH1(var.2) 0.984 0.703 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m14 MA0521.1 dyads_m14dyads_m14 Tcf12 0.880 0.691 14 11 11 14 0.7857 0.7857 1.0000 R 1
dyads_m14 MA1620.1 dyads_m14dyads_m14 Ptf1a(var.3) 0.789 0.676 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m14 MA0796.1 dyads_m14dyads_m14 TGIF1 0.786 0.674 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m14 MA1571.1 dyads_m14dyads_m14 TGIF2LX 0.779 0.668 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m14 MA0745.2 dyads_m14dyads_m14 SNAI2 0.711 0.660 14 13 13 14 0.9286 0.9286 1.0000 D 1
dyads_m14 MA0665.1 dyads_m14dyads_m14 MSC 0.922 0.658 14 10 10 14 0.7143 0.7143 1.0000 R 2
dyads_m14 MA0797.1 dyads_m14dyads_m14 TGIF2 0.766 0.656 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m14 MA0698.1 dyads_m14dyads_m14 ZBTB18 0.706 0.656 14 13 13 14 0.9286 0.9286 1.0000 R 1
dyads_m14 MA1572.1 dyads_m14dyads_m14 TGIF2LY 0.763 0.654 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m14 MA1472.1 dyads_m14dyads_m14 BHLHA15(var.2) 0.906 0.647 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m14 MA0667.1 dyads_m14dyads_m14 MYF6 0.900 0.643 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m14 MA0091.1 dyads_m14dyads_m14 TAL1::TCF3 0.735 0.630 14 12 12 14 0.8571 0.8571 1.0000 D 0
dyads_m14 MA0691.1 dyads_m14dyads_m14 TFAP4 0.878 0.627 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m14 MA0783.1 dyads_m14dyads_m14 PKNOX2 0.728 0.624 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m14 MA0816.1 dyads_m14dyads_m14 Ascl2 0.870 0.622 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m14 MA1635.1 dyads_m14dyads_m14 BHLHE22(var.2) 0.842 0.601 14 10 10 14 0.7143 0.7143 1.0000 R 2
dyads_m14 MA1100.2 dyads_m14dyads_m14 ASCL1 0.823 0.588 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m14 MA0820.1 dyads_m14dyads_m14 FIGLA 0.774 0.553 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m14 MA0048.2 dyads_m14dyads_m14 NHLH1 0.738 0.527 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m14 MA1655.1 dyads_m14dyads_m14 ZNF341 0.719 0.527 14 12 11 15 0.7333 0.7857 0.9167 D -1
dyads_m14 MA0774.1 dyads_m14dyads_m14 MEIS2 0.832 0.476 14 8 8 14 0.5714 0.5714 1.0000 R 6
dyads_m14 MA0775.1 dyads_m14dyads_m14 MEIS3 0.791 0.452 14 8 8 14 0.5714 0.5714 1.0000 R 6
dyads_m14 MA0498.2 dyads_m14dyads_m14 MEIS1 0.840 0.420 14 7 7 14 0.5000 0.5000 1.0000 R 7 
 Host name	pedagogix
 Job started	2020-04-14.171352
 Job done	2020-04-14.171425
 Seconds	4.43
	user	4.43
	system	0.53
	cuser	26.3
;	csystem	1.65