One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m15/peak-motifs_dyads_m15.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m15/peak-motifs_dyads_m15_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m15_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m15_shift0 (dyads_m15dyads_m15) |
 |
|
|
; dyads_m15 (dyads_m15dyads_m15); m=0 (reference); ncol1=11; shift=0; ncol=14; ybCCCAGCAsc---
; Alignment reference
a 1014 752 0 0 0 4269 0 0 4269 520 847 0 0 0
c 1099 1113 4269 4269 4260 0 0 4269 0 1276 1632 0 0 0
g 976 1302 0 0 9 0 4269 0 0 1849 1039 0 0 0
t 1180 1102 0 0 0 0 0 0 0 624 751 0 0 0
|
| MA1629.1_shift0 (Zic2) |
 |
|
|
; dyads_m15 versus MA1629.1 (Zic2); m=1/2; ncol2=14; w=11; offset=0; strand=D; shift=0; score=0.614749; mkCaCAGCAGGrrg
; cor=; Ncor=
a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0
c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0
g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0
t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0
|
| MA1628.1_shift2 (Zic1::Zic2) |
 |
|
|
; dyads_m15 versus MA1628.1 (Zic1::Zic2); m=2/2; ncol2=11; w=9; offset=2; strand=D; shift=2; score=0.537588; --cvCAGCAGGsr-
; cor=; Ncor=
a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0
c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0
g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0
t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0
|