| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m16_shift2 (dyads_m16dyads_m16) |
 |
  |
  |
; dyads_m16 (dyads_m16dyads_m16); m=0 (reference); ncol1=14; shift=2; ncol=18; --gsTGCAGCTGGGvc--
; Alignment reference
a 0 0 570 469 316 34 58 2856 28 48 68 26 94 84 793 660 0 0
c 0 0 748 1160 78 109 2817 39 31 2889 46 43 116 198 776 974 0 0
g 0 0 1085 920 358 2844 124 69 2933 51 35 2909 2435 2585 923 741 0 0
t 0 0 621 475 2272 37 25 60 32 36 2875 46 379 157 532 649 0 0
|
| MA0500.2_rc_shift3 (MYOG_rc) |
 |
|
|
; dyads_m16 versus MA0500.2_rc (MYOG_rc); m=1/12; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.689385; ---sarCAGCTGyts---
; cor=; Ncor=
a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0
c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0
g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0
t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
|
| MA1619.1_rc_shift3 (Ptf1a(var.2)_rc) |
 |
|
|
; dyads_m16 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=2/12; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.654633; ---rmaCAGCTGtky---
; cor=; Ncor=
a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0
c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0
g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0
t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0
|
| MA1641.1_rc_shift3 (MYF5_rc) |
 |
|
|
; dyads_m16 versus MA1641.1_rc (MYF5_rc); m=3/12; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.628988; ---gvaCAGCTGtbc---
; cor=; Ncor=
a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0
c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0
g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0
t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0
|
| MA1635.1_shift4 (BHLHE22(var.2)) |
 |
|
|
; dyads_m16 versus MA1635.1 (BHLHE22(var.2)); m=4/12; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.607285; ----csCAGCTGsg----
; cor=; Ncor=
a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0
c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0
g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0
t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
|
| MA0521.1_rc_shift3 (Tcf12_rc) |
 |
|
|
; dyads_m16 versus MA0521.1_rc (Tcf12_rc); m=5/12; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.60073; ---cwsCAGCTGYy----
; cor=; Ncor=
a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0
c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0
g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0
t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
|
| MA0048.2_rc_shift4 (NHLH1_rc) |
 |
|
|
; dyads_m16 versus MA0048.2_rc (NHLH1_rc); m=6/12; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.589385; ----mGCAGCTGCg----
; cor=; Ncor=
a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0
c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0
g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0
t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0
|
| MA1529.1_rc_shift0 (NHLH2_rc) |
 |
|
|
; dyads_m16 versus MA1529.1_rc (NHLH2_rc); m=7/12; ncol2=18; w=14; offset=-2; strand=R; shift=0; score=0.579483; gkGrCGCAGCTGCKrCcc
; cor=; Ncor=
a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0
c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0
g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0
t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0
|
| MA0522.3_rc_shift3 (TCF3_rc) |
 |
|
|
; dyads_m16 versus MA0522.3_rc (TCF3_rc); m=8/12; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.576214; ---ssGCAGGTGbs----
; cor=; Ncor=
a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0
c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0
g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0
t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0
|
| MA1648.1_rc_shift3 (TCF12(var.2)_rc) |
 |
|
|
; dyads_m16 versus MA1648.1_rc (TCF12(var.2)_rc); m=9/12; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.575453; ---srGCAGGTGss----
; cor=; Ncor=
a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0
c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0
g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0
t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0
|
| MA1100.2_shift4 (ASCL1) |
 |
|
|
; dyads_m16 versus MA1100.2 (ASCL1); m=10/12; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.563182; ----rrCAGCTGcy----
; cor=; Ncor=
a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0
c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0
g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0
t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0
|
| MA0816.1_rc_shift4 (Ascl2_rc) |
 |
|
|
; dyads_m16 versus MA0816.1_rc (Ascl2_rc); m=11/12; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.545112; ----rrCAGCTGyt----
; cor=; Ncor=
a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0
c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0
g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0
t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0
|
| MA1472.1_rc_shift4 (BHLHA15(var.2)_rc) |
 |
|
|
; dyads_m16 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/12; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.542908; ----rrCAGCTGbt----
; cor=; Ncor=
a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0
c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0
g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0
t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
|