One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m16_shift2 ; 13 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m16_shift2 (dyads_m16dyads_m16)    
; dyads_m16 (dyads_m16dyads_m16); m=0 (reference); ncol1=14; shift=2; ncol=18; --gsTGCAGCTGGGvc--
; Alignment reference
a	0	0	570	469	316	34	58	2856	28	48	68	26	94	84	793	660	0	0
c	0	0	748	1160	78	109	2817	39	31	2889	46	43	116	198	776	974	0	0
g	0	0	1085	920	358	2844	124	69	2933	51	35	2909	2435	2585	923	741	0	0
t	0	0	621	475	2272	37	25	60	32	36	2875	46	379	157	532	649	0	0
MA0500.2_rc_shift3 (MYOG_rc)
; dyads_m16 versus MA0500.2_rc (MYOG_rc); m=1/12; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.689385; ---sarCAGCTGyts---
; cor=; Ncor=
a	0	0	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0	0	0	0
c	0	0	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0	0	0	0
g	0	0	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0	0	0	0
t	0	0	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0	0	0	0
MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; dyads_m16 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=2/12; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.654633; ---rmaCAGCTGtky---
; cor=; Ncor=
a	0	0	0	1871.0	1974.0	4341.0	49.0	7121.0	33.0	223.0	28.0	27.0	529.0	1216.0	1607.0	0	0	0
c	0	0	0	1803.0	2426.0	1065.0	7150.0	40.0	299.0	6689.0	65.0	28.0	1308.0	1629.0	1974.0	0	0	0
g	0	0	0	1977.0	1632.0	1312.0	27.0	66.0	6697.0	307.0	41.0	7149.0	1070.0	2430.0	1803.0	0	0	0
t	0	0	0	1602.0	1221.0	535.0	27.0	26.0	224.0	34.0	7119.0	49.0	4346.0	1978.0	1869.0	0	0	0
MA1641.1_rc_shift3 (MYF5_rc)
; dyads_m16 versus MA1641.1_rc (MYF5_rc); m=3/12; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.628988; ---gvaCAGCTGtbc---
; cor=; Ncor=
a	0	0	0	2697.0	3507.0	7489.0	95.0	10966.0	100.0	222.0	129.0	43.0	578.0	1572.0	2554.0	0	0	0
c	0	0	0	2701.0	2985.0	1368.0	10912.0	47.0	230.0	10658.0	69.0	161.0	1774.0	3145.0	3258.0	0	0	0
g	0	0	0	3258.0	3146.0	1775.0	161.0	68.0	10657.0	230.0	47.0	10911.0	1368.0	2986.0	2700.0	0	0	0
t	0	0	0	2554.0	1572.0	578.0	42.0	129.0	223.0	100.0	10965.0	95.0	7490.0	3507.0	2698.0	0	0	0
MA1635.1_shift4 (BHLHE22(var.2))
; dyads_m16 versus MA1635.1 (BHLHE22(var.2)); m=4/12; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.607285; ----csCAGCTGsg----
; cor=; Ncor=
a	0	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0	0	0
c	0	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0	0	0
g	0	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0	0	0
t	0	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0	0	0
MA0521.1_rc_shift3 (Tcf12_rc)
; dyads_m16 versus MA0521.1_rc (Tcf12_rc); m=5/12; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.60073; ---cwsCAGCTGYy----
; cor=; Ncor=
a	0	0	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0	0
c	0	0	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0	0
g	0	0	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0	0
t	0	0	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0	0
MA0048.2_rc_shift4 (NHLH1_rc)
; dyads_m16 versus MA0048.2_rc (NHLH1_rc); m=6/12; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.589385; ----mGCAGCTGCg----
; cor=; Ncor=
a	0	0	0	0	1489.0	350.0	1.0	2166.0	0.0	114.0	0.0	0.0	142.0	111.0	0	0	0	0
c	0	0	0	0	2166.0	102.0	2166.0	4.0	124.0	2166.0	1.0	0.0	2166.0	181.0	0	0	0	0
g	0	0	0	0	736.0	2166.0	4.0	4.0	2166.0	301.0	3.0	2166.0	179.0	2166.0	0	0	0	0
t	0	0	0	0	308.0	296.0	2.0	0.0	96.0	0.0	2166.0	3.0	461.0	788.0	0	0	0	0
MA1529.1_rc_shift0 (NHLH2_rc)
; dyads_m16 versus MA1529.1_rc (NHLH2_rc); m=7/12; ncol2=18; w=14; offset=-2; strand=R; shift=0; score=0.579483; gkGrCGCAGCTGCKrCcc
; cor=; Ncor=
a	4228.0	3330.0	2533.0	13503.0	740.0	1230.0	0.0	21358.0	0.0	1054.0	1.0	5.0	2634.0	151.0	5394.0	2763.0	5198.0	4143.0
c	2264.0	1579.0	1183.0	1520.0	20977.0	275.0	21363.0	3.0	2266.0	20096.0	26.0	2.0	18930.0	671.0	4908.0	18450.0	13903.0	9732.0
g	11271.0	13462.0	18351.0	7207.0	204.0	20611.0	2.0	14.0	20268.0	2459.0	0.0	21359.0	2324.0	15451.0	6141.0	1065.0	2219.0	2655.0
t	3601.0	6392.0	3766.0	1184.0	210.0	693.0	0.0	0.0	525.0	6.0	21364.0	2.0	2378.0	5603.0	4921.0	3741.0	4312.0	4834.0
MA0522.3_rc_shift3 (TCF3_rc)
; dyads_m16 versus MA0522.3_rc (TCF3_rc); m=8/12; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.576214; ---ssGCAGGTGbs----
; cor=; Ncor=
a	0	0	0	6432.0	7233.0	1237.0	492.0	27539.0	283.0	950.0	375.0	705.0	4528.0	6240.0	0	0	0	0
c	0	0	0	9222.0	8025.0	987.0	28642.0	1339.0	2652.0	1362.0	1574.0	708.0	9432.0	8539.0	0	0	0	0
g	0	0	0	10122.0	8727.0	28742.0	1038.0	2003.0	27199.0	28640.0	396.0	29379.0	9269.0	10212.0	0	0	0	0
t	0	0	0	5485.0	7276.0	295.0	1089.0	380.0	1127.0	309.0	28916.0	469.0	8032.0	6270.0	0	0	0	0
MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; dyads_m16 versus MA1648.1_rc (TCF12(var.2)_rc); m=9/12; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.575453; ---srGCAGGTGss----
; cor=; Ncor=
a	0	0	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0	0	0	0	0
c	0	0	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0	0	0	0	0
g	0	0	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0	0	0	0	0
t	0	0	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0	0	0	0	0
MA1100.2_shift4 (ASCL1)
; dyads_m16 versus MA1100.2 (ASCL1); m=10/12; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.563182; ----rrCAGCTGcy----
; cor=; Ncor=
a	0	0	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0	0	0	0	0
c	0	0	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0	0	0	0	0
g	0	0	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0	0	0	0	0
t	0	0	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0	0	0	0	0
MA0816.1_rc_shift4 (Ascl2_rc)
; dyads_m16 versus MA0816.1_rc (Ascl2_rc); m=11/12; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.545112; ----rrCAGCTGyt----
; cor=; Ncor=
a	0	0	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0	0	0	0	0
c	0	0	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0	0	0	0	0
g	0	0	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0	0	0	0	0
t	0	0	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0	0	0	0	0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; dyads_m16 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/12; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.542908; ----rrCAGCTGbt----
; cor=; Ncor=
a	0	0	0	0	577.0	1015.0	0.0	1504.0	11.0	467.0	137.0	33.0	81.0	170.0	0	0	0	0
c	0	0	0	0	316.0	489.0	1504.0	0.0	72.0	1504.0	33.0	6.0	591.0	357.0	0	0	0	0
g	0	0	0	0	410.0	610.0	0.0	4.0	1504.0	30.0	33.0	1504.0	607.0	281.0	0	0	0	0
t	0	0	0	0	202.0	54.0	0.0	54.0	445.0	11.0	1504.0	47.0	897.0	697.0	0	0	0	0