One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m17/peak-motifs_dyads_m17.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m17/peak-motifs_dyads_m17_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m17_shift5 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m17_shift5 (dyads_m17dyads_m17)
; dyads_m17 (dyads_m17dyads_m17); m=0 (reference); ncol1=11; shift=5; ncol=17; -----ssCCGCCCGcs- ; Alignment reference a 0 0 0 0 0 330 301 15 0 0 35 14 0 0 299 380 0 c 0 0 0 0 0 1628 1235 3192 3306 0 3260 2779 3336 0 1937 1156 0 g 0 0 0 0 0 934 1353 133 58 3364 36 548 28 3364 817 1431 0 t 0 0 0 0 0 472 475 24 0 0 33 23 0 0 311 397 0

MA1513.1_shift4 (KLF15)
; dyads_m17 versus MA1513.1 (KLF15); m=1/8; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.699533; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0162.4_shift5 (EGR1)
; dyads_m17 versus MA0162.4 (EGR1); m=2/8; ncol2=14; w=11; offset=0; strand=D; shift=5; score=0.571896; -----ccmCGCCCACgC ; cor=; Ncor= a 0 0 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 c 0 0 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 g 0 0 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 t 0 0 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0

MA0751.1_shift5 (ZIC4)
; dyads_m17 versus MA0751.1 (ZIC4); m=3/8; ncol2=15; w=11; offset=0; strand=D; shift=5; score=0.530205; -----krCCCCCyGykG ; cor=; Ncor= a 0 0 0 0 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 c 0 0 0 0 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 g 0 0 0 0 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 t 0 0 0 0 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0

MA0599.1_shift4 (KLF5)
; dyads_m17 versus MA0599.1 (KLF5); m=4/8; ncol2=10; w=9; offset=-1; strand=D; shift=4; score=0.528554; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0732.1_shift5 (EGR3)
; dyads_m17 versus MA0732.1 (EGR3); m=5/8; ncol2=15; w=11; offset=0; strand=D; shift=5; score=0.518383; -----yhmCGCCCMCGC ; cor=; Ncor= a 0 0 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 c 0 0 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 g 0 0 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 t 0 0 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0

MA0733.1_shift5 (EGR4)
; dyads_m17 versus MA0733.1 (EGR4); m=6/8; ncol2=16; w=11; offset=0; strand=D; shift=5; score=0.490571; -----yymCGCCCACGC ; cor=; Ncor= a 0 0 0 0 0 1167.0 1143.0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 c 0 0 0 0 0 1459.0 1664.0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 g 0 0 0 0 0 1004.0 527.0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 t 0 0 0 0 0 1953.0 2131.0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0

MA0516.2_shift0 (SP2)
; dyads_m17 versus MA0516.2 (SP2); m=7/8; ncol2=17; w=11; offset=-5; strand=D; shift=0; score=0.480864; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA1122.1_rc_shift2 (TFDP1_rc)
; dyads_m17 versus MA1122.1_rc (TFDP1_rc); m=8/8; ncol2=11; w=8; offset=-3; strand=R; shift=2; score=0.425312; --ssTTCCCGCsc---- ; cor=; Ncor= a 0 0 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 0 0 c 0 0 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 0 0 g 0 0 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 0 0 t 0 0 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m17_shift5 (dyads_m17dyads_m17)				; dyads_m17 (dyads_m17dyads_m17); m=0 (reference); ncol1=11; shift=5; ncol=17; -----ssCCGCCCGcs- ; Alignment reference a 0 0 0 0 0 330 301 15 0 0 35 14 0 0 299 380 0 c 0 0 0 0 0 1628 1235 3192 3306 0 3260 2779 3336 0 1937 1156 0 g 0 0 0 0 0 934 1353 133 58 3364 36 548 28 3364 817 1431 0 t 0 0 0 0 0 472 475 24 0 0 33 23 0 0 311 397 0
MA1513.1_shift4 (KLF15)				; dyads_m17 versus MA1513.1 (KLF15); m=1/8; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.699533; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0
MA0162.4_shift5 (EGR1)				; dyads_m17 versus MA0162.4 (EGR1); m=2/8; ncol2=14; w=11; offset=0; strand=D; shift=5; score=0.571896; -----ccmCGCCCACgC ; cor=; Ncor= a 0 0 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 c 0 0 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 g 0 0 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 t 0 0 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0
MA0751.1_shift5 (ZIC4)				; dyads_m17 versus MA0751.1 (ZIC4); m=3/8; ncol2=15; w=11; offset=0; strand=D; shift=5; score=0.530205; -----krCCCCCyGykG ; cor=; Ncor= a 0 0 0 0 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 c 0 0 0 0 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 g 0 0 0 0 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 t 0 0 0 0 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0
MA0599.1_shift4 (KLF5)				; dyads_m17 versus MA0599.1 (KLF5); m=4/8; ncol2=10; w=9; offset=-1; strand=D; shift=4; score=0.528554; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA0732.1_shift5 (EGR3)				; dyads_m17 versus MA0732.1 (EGR3); m=5/8; ncol2=15; w=11; offset=0; strand=D; shift=5; score=0.518383; -----yhmCGCCCMCGC ; cor=; Ncor= a 0 0 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 c 0 0 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 g 0 0 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 t 0 0 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0
MA0733.1_shift5 (EGR4)				; dyads_m17 versus MA0733.1 (EGR4); m=6/8; ncol2=16; w=11; offset=0; strand=D; shift=5; score=0.490571; -----yymCGCCCACGC ; cor=; Ncor= a 0 0 0 0 0 1167.0 1143.0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 c 0 0 0 0 0 1459.0 1664.0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 g 0 0 0 0 0 1004.0 527.0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 t 0 0 0 0 0 1953.0 2131.0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0
MA0516.2_shift0 (SP2)				; dyads_m17 versus MA0516.2 (SP2); m=7/8; ncol2=17; w=11; offset=-5; strand=D; shift=0; score=0.480864; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0
MA1122.1_rc_shift2 (TFDP1_rc)				; dyads_m17 versus MA1122.1_rc (TFDP1_rc); m=8/8; ncol2=11; w=8; offset=-3; strand=R; shift=2; score=0.425312; --ssTTCCCGCsc---- ; cor=; Ncor= a 0 0 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 0 0 c 0 0 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 0 0 g 0 0 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 0 0 t 0 0 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0 0 0