One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m2_shift0 ; 5 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m2_shift0 (dyads_m2dyads_m2)     
; dyads_m2 (dyads_m2dyads_m2); m=0 (reference); ncol1=14; shift=0; ncol=15; ssGGCGssCGCGss-
; Alignment reference
a	1189	1088	341	209	339	124	1122	1130	264	193	230	156	1106	1335	0
c	3268	4312	1140	624	8719	428	3800	3405	7896	339	8743	458	3865	3326	0
g	4057	3330	7793	8707	405	8952	3694	4172	1313	8983	505	8868	3645	3839	0
t	1164	948	404	138	215	174	1062	971	205	163	200	196	1062	1178	0
MA0162.4_rc_shift1 (EGR1_rc) 
; dyads_m2 versus MA0162.4_rc (EGR1_rc); m=1/4; ncol2=14; w=13; offset=1; strand=R; shift=1; score=0.609111; -skGcGTGGGCGkgg
; cor=; Ncor=
a	0	5251.0	4909.0	2276.0	2552.0	239.0	759.0	628.0	382.0	368.0	2120.0	797.0	1933.0	4641.0	5280.0
c	0	7852.0	6345.0	2157.0	20544.0	699.0	2122.0	698.0	1455.0	665.0	22237.0	756.0	3854.0	7211.0	6621.0
g	0	13686.0	10441.0	25196.0	2806.0	29507.0	5420.0	28958.0	27321.0	29338.0	1131.0	28403.0	10303.0	14749.0	11610.0
t	0	3809.0	8903.0	969.0	4696.0	153.0	22297.0	314.0	1440.0	227.0	5110.0	642.0	14508.0	3997.0	7087.0
MA0506.1_shift3 (NRF1) 
; dyads_m2 versus MA0506.1 (NRF1); m=2/4; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.601989; ---GCGCmTGCGCr-
; cor=; Ncor=
a	0	0	0	602.0	623.0	196.0	0.0	1514.0	0.0	0.0	0.0	0.0	74.0	2245.0	0
c	0	0	0	375.0	4001.0	189.0	4016.0	1862.0	403.0	0.0	4338.0	349.0	4550.0	804.0	0
g	0	0	0	3647.0	0.0	4239.0	468.0	935.0	528.0	4624.0	0.0	4275.0	0.0	1575.0	0
t	0	0	0	0.0	0.0	0.0	140.0	313.0	3693.0	0.0	286.0	0.0	0.0	0.0	0
MA1650.1_rc_shift3 (ZBTB14_rc) 
; dyads_m2 versus MA1650.1_rc (ZBTB14_rc); m=3/4; ncol2=12; w=11; offset=3; strand=R; shift=3; score=0.535615; ---ssGTGCGCGGss
; cor=; Ncor=
a	0	0	0	606.0	508.0	123.0	0.0	52.0	67.0	82.0	62.0	59.0	73.0	519.0	530.0
c	0	0	0	1239.0	1451.0	651.0	10.0	261.0	4043.0	319.0	4098.0	155.0	614.0	1555.0	1668.0
g	0	0	0	2260.0	1618.0	3674.0	37.0	4178.0	305.0	4078.0	294.0	4292.0	3525.0	1972.0	1779.0
t	0	0	0	442.0	970.0	99.0	4500.0	56.0	132.0	68.0	93.0	41.0	335.0	501.0	570.0
MA0632.2_rc_shift5 (TCFL5_rc) 
; dyads_m2 versus MA0632.2_rc (TCFL5_rc); m=4/4; ncol2=10; w=9; offset=5; strand=R; shift=5; score=0.467151; -----gkGCGCGyGm
; cor=; Ncor=
a	0	0	0	0	0	8670.0	25921.0	635.0	0.0	15451.0	0.0	1643.0	9359.0	0.0	36854.0
c	0	0	0	0	0	5747.0	19096.0	4594.0	72543.0	0.0	72543.0	0.0	29710.0	0.0	22297.0
g	0	0	0	0	0	47538.0	44394.0	72543.0	657.0	57092.0	0.0	72543.0	0.0	72543.0	10582.0
t	0	0	0	0	0	10588.0	72543.0	1593.0	3520.0	1765.0	1566.0	0.0	72543.0	0.0	2810.0