Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21.tf
		file1	1	10	18098
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m21 MA1629.1 dyads_m21dyads_m21 Zic2 0.865 0.618 10 14 10 14 0.7143 1.0000 0.7143 D 0
dyads_m21 MA1655.1 dyads_m21dyads_m21 ZNF341 0.734 0.612 10 12 10 12 0.8333 1.0000 0.8333 D -1
dyads_m21 MA0002.2 dyads_m21dyads_m21 RUNX1 0.759 0.570 10 11 9 12 0.7500 0.9000 0.8182 R -2
dyads_m21 MA1619.1 dyads_m21dyads_m21 Ptf1a(var.2) 0.817 0.566 10 12 9 13 0.6923 0.9000 0.7500 D 1
dyads_m21 MA0483.1 dyads_m21dyads_m21 Gfi1b 0.754 0.565 10 11 9 12 0.7500 0.9000 0.8182 D -2
dyads_m21 MA1641.1 dyads_m21dyads_m21 MYF5 0.815 0.564 10 12 9 13 0.6923 0.9000 0.7500 R 1
dyads_m21 MA1593.1 dyads_m21dyads_m21 ZNF317 0.787 0.545 10 12 9 13 0.6923 0.9000 0.7500 D 1
dyads_m21 MA0832.1 dyads_m21dyads_m21 Tcf21 0.746 0.533 10 14 10 14 0.7143 1.0000 0.7143 D 0
dyads_m21 MA0500.2 dyads_m21dyads_m21 MYOG 0.731 0.506 10 12 9 13 0.6923 0.9000 0.7500 D 1
dyads_m21 MA1635.1 dyads_m21dyads_m21 BHLHE22(var.2) 0.750 0.500 10 10 8 12 0.6667 0.8000 0.8000 D 2
dyads_m21 MA0048.2 dyads_m21dyads_m21 NHLH1 0.750 0.500 10 10 8 12 0.6667 0.8000 0.8000 D 2
dyads_m21 MA1472.1 dyads_m21dyads_m21 BHLHA15(var.2) 0.747 0.498 10 10 8 12 0.6667 0.8000 0.8000 R 2
dyads_m21 MA1467.1 dyads_m21dyads_m21 ATOH1(var.2) 0.743 0.496 10 10 8 12 0.6667 0.8000 0.8000 D 2
dyads_m21 MA0665.1 dyads_m21dyads_m21 MSC 0.738 0.492 10 10 8 12 0.6667 0.8000 0.8000 D 2
dyads_m21 MA0691.1 dyads_m21dyads_m21 TFAP4 0.733 0.489 10 10 8 12 0.6667 0.8000 0.8000 D 2
dyads_m21 MA0038.2 dyads_m21dyads_m21 GFI1 0.703 0.487 10 12 9 13 0.6923 0.9000 0.7500 D -3
dyads_m21 MA1628.1 dyads_m21dyads_m21 Zic1::Zic2 0.775 0.477 10 11 8 13 0.6154 0.8000 0.7273 D 2
dyads_m21 MA0521.1 dyads_m21dyads_m21 Tcf12 0.760 0.468 10 11 8 13 0.6154 0.8000 0.7273 D 2
dyads_m21 MA0697.1 dyads_m21dyads_m21 ZIC3 0.764 0.430 10 15 9 16 0.5625 0.9000 0.6000 R 1
dyads_m21 MA0696.1 dyads_m21dyads_m21 ZIC1 0.840 0.420 10 14 8 16 0.5000 0.8000 0.5714 R 2
dyads_m21 MA0751.1 dyads_m21dyads_m21 ZIC4 0.715 0.402 10 15 9 16 0.5625 0.9000 0.6000 R 1
dyads_m21 MA1529.1 dyads_m21dyads_m21 NHLH2 0.720 0.400 10 18 10 18 0.5556 1.0000 0.5556 D -2 
 Host name	pedagogix
 Job started	2020-04-14.171529
 Job done	2020-04-14.171555
 Seconds	3.9
	user	3.9
	system	0.42
	cuser	19.08
;	csystem	1.26