One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m21_shift3 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m21_shift3 (dyads_m21dyads_m21)
; dyads_m21 (dyads_m21dyads_m21); m=0 (reference); ncol1=10; shift=3; ncol=18; ---vsCACAGCwg----- ; Alignment reference a 0 0 0 4737 3674 0 18098 0 18098 0 0 5023 2538 0 0 0 0 0 c 0 0 0 5174 6000 18098 0 18098 0 0 18098 4252 4439 0 0 0 0 0 g 0 0 0 5202 5330 0 0 0 0 18098 0 1165 8666 0 0 0 0 0 t 0 0 0 2985 3094 0 0 0 0 0 0 7658 2455 0 0 0 0 0

MA1629.1_shift3 (Zic2)
; dyads_m21 versus MA1629.1 (Zic2); m=1/22; ncol2=14; w=10; offset=0; strand=D; shift=3; score=0.617704; ---mkCaCAGCAGGrrg- ; cor=; Ncor= a 0 0 0 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 c 0 0 0 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 g 0 0 0 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 t 0 0 0 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0

MA1655.1_shift2 (ZNF341)
; dyads_m21 versus MA1655.1 (ZNF341); m=2/22; ncol2=12; w=10; offset=-1; strand=D; shift=2; score=0.611509; --grGAACAGCcas---- ; cor=; Ncor= a 0 0 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 c 0 0 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 g 0 0 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 t 0 0 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0

MA0002.2_rc_shift1 (RUNX1_rc)
; dyads_m21 versus MA0002.2_rc (RUNX1_rc); m=3/22; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.569576; -waaCCACAram------ ; cor=; Ncor= a 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 0 0 c 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 0 0 g 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 0 0 t 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0 0 0

MA1619.1_shift4 (Ptf1a(var.2))
; dyads_m21 versus MA1619.1 (Ptf1a(var.2)); m=4/22; ncol2=12; w=9; offset=1; strand=D; shift=4; score=0.565753; ----rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0483.1_shift1 (Gfi1b)
; dyads_m21 versus MA0483.1 (Gfi1b); m=5/22; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.56521; -aAATCwCwGCw------ ; cor=; Ncor= a 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 57.0 142.0 740.0 0 0 0 0 0 0 c 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 1.0 1328.0 433.0 0 0 0 0 0 0 g 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 1676.0 76.0 130.0 0 0 0 0 0 0 t 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0 27.0 215.0 458.0 0 0 0 0 0 0

MA1641.1_rc_shift4 (MYF5_rc)
; dyads_m21 versus MA1641.1_rc (MYF5_rc); m=6/22; ncol2=12; w=9; offset=1; strand=R; shift=4; score=0.564195; ----gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1593.1_shift4 (ZNF317)
; dyads_m21 versus MA1593.1 (ZNF317); m=7/22; ncol2=12; w=9; offset=1; strand=D; shift=4; score=0.545121; ----wrACAGCAGAyw-- ; cor=; Ncor= a 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 0 c 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 0 g 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 0 t 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0 0

MA0832.1_shift3 (Tcf21)
; dyads_m21 versus MA0832.1 (Tcf21); m=8/22; ncol2=14; w=10; offset=0; strand=D; shift=3; score=0.532552; ---ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA0500.2_shift4 (MYOG)
; dyads_m21 versus MA0500.2 (MYOG); m=9/22; ncol2=12; w=9; offset=1; strand=D; shift=4; score=0.505831; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1635.1_shift5 (BHLHE22(var.2))
; dyads_m21 versus MA1635.1 (BHLHE22(var.2)); m=10/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.50024; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA0048.2_shift5 (NHLH1)
; dyads_m21 versus MA0048.2 (NHLH1); m=11/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.49984; -----cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA1472.1_rc_shift5 (BHLHA15(var.2)_rc)
; dyads_m21 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/22; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.498037; -----rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA1467.1_shift5 (ATOH1(var.2))
; dyads_m21 versus MA1467.1 (ATOH1(var.2)); m=13/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.495501; -----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0665.1_shift5 (MSC)
; dyads_m21 versus MA0665.1 (MSC); m=14/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.491859; -----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0691.1_shift5 (TFAP4)
; dyads_m21 versus MA0691.1 (TFAP4); m=15/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.488668; -----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0038.2_shift0 (GFI1)
; dyads_m21 versus MA0038.2 (GFI1); m=16/22; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.48658; cmAATCACdGCa------ ; cor=; Ncor= a 3668.0 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 2294.0 292.0 16713.0 0 0 0 0 0 0 c 11575.0 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 266.0 27891.0 5221.0 0 0 0 0 0 0 g 7376.0 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 27514.0 0.0 4079.0 0 0 0 0 0 0 t 7527.0 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0 888.0 3702.0 4134.0 0 0 0 0 0 0

MA1628.1_shift5 (Zic1::Zic2)
; dyads_m21 versus MA1628.1 (Zic1::Zic2); m=17/22; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.477166; -----cvCAGCAGGsr-- ; cor=; Ncor= a 0 0 0 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 c 0 0 0 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 g 0 0 0 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 t 0 0 0 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0

MA0521.1_shift5 (Tcf12)
; dyads_m21 versus MA0521.1 (Tcf12); m=18/22; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.467906; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA0697.1_rc_shift4 (ZIC3_rc)
; dyads_m21 versus MA0697.1_rc (ZIC3_rc); m=19/22; ncol2=15; w=9; offset=1; strand=R; shift=4; score=0.429657; ----dCrCaGCRGGGGGT ; cor=; Ncor= a 0 0 0 0 53.0 23.0 74.0 3.0 163.0 29.0 2.0 61.0 0.0 0.0 19.0 7.0 4.0 0.0 c 0 0 0 0 13.0 214.0 13.0 225.0 53.0 6.0 217.0 0.0 0.0 0.0 0.0 3.0 0.0 43.0 g 0 0 0 0 79.0 2.0 89.0 0.0 26.0 178.0 5.0 142.0 206.0 209.0 188.0 204.0 203.0 32.0 t 0 0 0 0 56.0 3.0 24.0 3.0 18.0 4.0 22.0 0.0 0.0 0.0 22.0 7.0 7.0 163.0

MA0696.1_rc_shift5 (ZIC1_rc)
; dyads_m21 versus MA0696.1_rc (ZIC1_rc); m=20/22; ncol2=14; w=8; offset=2; strand=R; shift=5; score=0.419901; -----CrCAGCrGGGGGT ; cor=; Ncor= a 0 0 0 0 0 2725.0 16190.0 1.0 27084.0 6735.0 14.0 10313.0 14.0 7.0 927.0 281.0 125.0 23.0 c 0 0 0 0 0 34431.0 1690.0 34649.0 5531.0 439.0 31995.0 0.0 10.0 4.0 327.0 204.0 58.0 7408.0 g 0 0 0 0 0 520.0 7693.0 24.0 1757.0 27426.0 45.0 18412.0 29532.0 29399.0 25527.0 29217.0 28949.0 2660.0 t 0 0 0 0 0 35.0 3121.0 73.0 1215.0 23.0 2156.0 22.0 185.0 0.0 2606.0 1264.0 836.0 22722.0

MA0751.1_rc_shift4 (ZIC4_rc)
; dyads_m21 versus MA0751.1_rc (ZIC4_rc); m=21/22; ncol2=15; w=9; offset=1; strand=R; shift=4; score=0.401985; ----dCrCmrCrGGGGGy ; cor=; Ncor= a 0 0 0 0 916.0 1156.0 1454.0 67.0 3488.0 1017.0 69.0 1078.0 11.0 1.0 275.0 147.0 98.0 21.0 c 0 0 0 0 363.0 4522.0 599.0 5086.0 1903.0 252.0 4795.0 6.0 0.0 0.0 225.0 121.0 52.0 1553.0 g 0 0 0 0 1224.0 452.0 1044.0 18.0 865.0 2279.0 68.0 2222.0 2985.0 2999.0 2757.0 2890.0 2870.0 812.0 t 0 0 0 0 1083.0 74.0 704.0 258.0 1052.0 24.0 1095.0 24.0 114.0 8.0 614.0 209.0 315.0 3013.0

MA1529.1_shift1 (NHLH2)
; dyads_m21 versus MA1529.1 (NHLH2); m=22/22; ncol2=18; w=10; offset=-2; strand=D; shift=1; score=0.400139; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m21_shift3 (dyads_m21dyads_m21)				; dyads_m21 (dyads_m21dyads_m21); m=0 (reference); ncol1=10; shift=3; ncol=18; ---vsCACAGCwg----- ; Alignment reference a 0 0 0 4737 3674 0 18098 0 18098 0 0 5023 2538 0 0 0 0 0 c 0 0 0 5174 6000 18098 0 18098 0 0 18098 4252 4439 0 0 0 0 0 g 0 0 0 5202 5330 0 0 0 0 18098 0 1165 8666 0 0 0 0 0 t 0 0 0 2985 3094 0 0 0 0 0 0 7658 2455 0 0 0 0 0
MA1629.1_shift3 (Zic2)				; dyads_m21 versus MA1629.1 (Zic2); m=1/22; ncol2=14; w=10; offset=0; strand=D; shift=3; score=0.617704; ---mkCaCAGCAGGrrg- ; cor=; Ncor= a 0 0 0 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 c 0 0 0 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 g 0 0 0 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 t 0 0 0 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0
MA1655.1_shift2 (ZNF341)				; dyads_m21 versus MA1655.1 (ZNF341); m=2/22; ncol2=12; w=10; offset=-1; strand=D; shift=2; score=0.611509; --grGAACAGCcas---- ; cor=; Ncor= a 0 0 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 c 0 0 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 g 0 0 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 t 0 0 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0
MA0002.2_rc_shift1 (RUNX1_rc)				; dyads_m21 versus MA0002.2_rc (RUNX1_rc); m=3/22; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.569576; -waaCCACAram------ ; cor=; Ncor= a 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 0 0 c 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 0 0 g 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 0 0 t 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0 0 0
MA1619.1_shift4 (Ptf1a(var.2))				; dyads_m21 versus MA1619.1 (Ptf1a(var.2)); m=4/22; ncol2=12; w=9; offset=1; strand=D; shift=4; score=0.565753; ----rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0
MA0483.1_shift1 (Gfi1b)				; dyads_m21 versus MA0483.1 (Gfi1b); m=5/22; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.56521; -aAATCwCwGCw------ ; cor=; Ncor= a 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 57.0 142.0 740.0 0 0 0 0 0 0 c 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 1.0 1328.0 433.0 0 0 0 0 0 0 g 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 1676.0 76.0 130.0 0 0 0 0 0 0 t 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0 27.0 215.0 458.0 0 0 0 0 0 0
MA1641.1_rc_shift4 (MYF5_rc)				; dyads_m21 versus MA1641.1_rc (MYF5_rc); m=6/22; ncol2=12; w=9; offset=1; strand=R; shift=4; score=0.564195; ----gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0
MA1593.1_shift4 (ZNF317)				; dyads_m21 versus MA1593.1 (ZNF317); m=7/22; ncol2=12; w=9; offset=1; strand=D; shift=4; score=0.545121; ----wrACAGCAGAyw-- ; cor=; Ncor= a 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 0 c 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 0 g 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 0 t 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0 0
MA0832.1_shift3 (Tcf21)				; dyads_m21 versus MA0832.1 (Tcf21); m=8/22; ncol2=14; w=10; offset=0; strand=D; shift=3; score=0.532552; ---ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0
MA0500.2_shift4 (MYOG)				; dyads_m21 versus MA0500.2 (MYOG); m=9/22; ncol2=12; w=9; offset=1; strand=D; shift=4; score=0.505831; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0
MA1635.1_shift5 (BHLHE22(var.2))				; dyads_m21 versus MA1635.1 (BHLHE22(var.2)); m=10/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.50024; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0
MA0048.2_shift5 (NHLH1)				; dyads_m21 versus MA0048.2 (NHLH1); m=11/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.49984; -----cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0
MA1472.1_rc_shift5 (BHLHA15(var.2)_rc)				; dyads_m21 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/22; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.498037; -----rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0
MA1467.1_shift5 (ATOH1(var.2))				; dyads_m21 versus MA1467.1 (ATOH1(var.2)); m=13/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.495501; -----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0
MA0665.1_shift5 (MSC)				; dyads_m21 versus MA0665.1 (MSC); m=14/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.491859; -----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0
MA0691.1_shift5 (TFAP4)				; dyads_m21 versus MA0691.1 (TFAP4); m=15/22; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.488668; -----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0
MA0038.2_shift0 (GFI1)				; dyads_m21 versus MA0038.2 (GFI1); m=16/22; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.48658; cmAATCACdGCa------ ; cor=; Ncor= a 3668.0 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 2294.0 292.0 16713.0 0 0 0 0 0 0 c 11575.0 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 266.0 27891.0 5221.0 0 0 0 0 0 0 g 7376.0 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 27514.0 0.0 4079.0 0 0 0 0 0 0 t 7527.0 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0 888.0 3702.0 4134.0 0 0 0 0 0 0
MA1628.1_shift5 (Zic1::Zic2)				; dyads_m21 versus MA1628.1 (Zic1::Zic2); m=17/22; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.477166; -----cvCAGCAGGsr-- ; cor=; Ncor= a 0 0 0 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 c 0 0 0 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 g 0 0 0 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 t 0 0 0 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0
MA0521.1_shift5 (Tcf12)				; dyads_m21 versus MA0521.1 (Tcf12); m=18/22; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.467906; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA0697.1_rc_shift4 (ZIC3_rc)				; dyads_m21 versus MA0697.1_rc (ZIC3_rc); m=19/22; ncol2=15; w=9; offset=1; strand=R; shift=4; score=0.429657; ----dCrCaGCRGGGGGT ; cor=; Ncor= a 0 0 0 0 53.0 23.0 74.0 3.0 163.0 29.0 2.0 61.0 0.0 0.0 19.0 7.0 4.0 0.0 c 0 0 0 0 13.0 214.0 13.0 225.0 53.0 6.0 217.0 0.0 0.0 0.0 0.0 3.0 0.0 43.0 g 0 0 0 0 79.0 2.0 89.0 0.0 26.0 178.0 5.0 142.0 206.0 209.0 188.0 204.0 203.0 32.0 t 0 0 0 0 56.0 3.0 24.0 3.0 18.0 4.0 22.0 0.0 0.0 0.0 22.0 7.0 7.0 163.0
MA0696.1_rc_shift5 (ZIC1_rc)				; dyads_m21 versus MA0696.1_rc (ZIC1_rc); m=20/22; ncol2=14; w=8; offset=2; strand=R; shift=5; score=0.419901; -----CrCAGCrGGGGGT ; cor=; Ncor= a 0 0 0 0 0 2725.0 16190.0 1.0 27084.0 6735.0 14.0 10313.0 14.0 7.0 927.0 281.0 125.0 23.0 c 0 0 0 0 0 34431.0 1690.0 34649.0 5531.0 439.0 31995.0 0.0 10.0 4.0 327.0 204.0 58.0 7408.0 g 0 0 0 0 0 520.0 7693.0 24.0 1757.0 27426.0 45.0 18412.0 29532.0 29399.0 25527.0 29217.0 28949.0 2660.0 t 0 0 0 0 0 35.0 3121.0 73.0 1215.0 23.0 2156.0 22.0 185.0 0.0 2606.0 1264.0 836.0 22722.0
MA0751.1_rc_shift4 (ZIC4_rc)				; dyads_m21 versus MA0751.1_rc (ZIC4_rc); m=21/22; ncol2=15; w=9; offset=1; strand=R; shift=4; score=0.401985; ----dCrCmrCrGGGGGy ; cor=; Ncor= a 0 0 0 0 916.0 1156.0 1454.0 67.0 3488.0 1017.0 69.0 1078.0 11.0 1.0 275.0 147.0 98.0 21.0 c 0 0 0 0 363.0 4522.0 599.0 5086.0 1903.0 252.0 4795.0 6.0 0.0 0.0 225.0 121.0 52.0 1553.0 g 0 0 0 0 1224.0 452.0 1044.0 18.0 865.0 2279.0 68.0 2222.0 2985.0 2999.0 2757.0 2890.0 2870.0 812.0 t 0 0 0 0 1083.0 74.0 704.0 258.0 1052.0 24.0 1095.0 24.0 114.0 8.0 614.0 209.0 315.0 3013.0
MA1529.1_shift1 (NHLH2)				; dyads_m21 versus MA1529.1 (NHLH2); m=22/22; ncol2=18; w=10; offset=-2; strand=D; shift=1; score=0.400139; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0