One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m22/peak-motifs_dyads_m22.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m22/peak-motifs_dyads_m22_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m22_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m22_shift0 (dyads_m22dyads_m22) |
 |
|
|
; dyads_m22 (dyads_m22dyads_m22); m=0 (reference); ncol1=10; shift=0; ncol=12; ssACTGTGgs--
; Alignment reference
a 1291 1283 6381 0 0 0 0 0 1244 1212 0 0
c 1809 2774 0 6381 0 0 0 0 1496 1878 0 0
g 1707 1627 0 0 0 6381 0 6381 2281 1919 0 0
t 1574 697 0 0 6381 0 6381 0 1360 1372 0 0
|
| MA0002.2_shift1 (RUNX1) |
 |
|
|
; dyads_m22 versus MA0002.2 (RUNX1); m=1/1; ncol2=11; w=9; offset=1; strand=D; shift=1; score=0.552215; -ktyTGTGGttw
; cor=; Ncor=
a 0 287.0 234.0 123.0 57.0 0.0 87.0 0.0 17.0 10.0 131.0 500.0
c 0 496.0 485.0 1072.0 0.0 75.0 127.0 0.0 42.0 400.0 463.0 158.0
g 0 696.0 467.0 149.0 7.0 1872.0 70.0 1987.0 1848.0 251.0 81.0 289.0
t 0 521.0 814.0 656.0 1936.0 53.0 1716.0 13.0 93.0 1339.0 1325.0 1053.0
|