One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m29/peak-motifs_dyads_m29.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m29/peak-motifs_dyads_m29_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m29_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m29_shift0 (dyads_m29dyads_m29) |
 |
|
|
; dyads_m29 (dyads_m29dyads_m29); m=0 (reference); ncol1=10; shift=0; ncol=13; ssCTCTGCys---
; Alignment reference
a 2009 1476 0 0 0 0 0 0 2840 1888 0 0 0
c 3214 3892 11545 0 11545 0 0 11545 4242 3489 0 0 0
g 3746 3538 0 0 0 0 11545 0 1175 3409 0 0 0
t 2576 2639 0 11545 0 11545 0 0 3288 2759 0 0 0
|
| MA1593.1_rc_shift1 (ZNF317_rc) |
 |
|
|
; dyads_m29 versus MA1593.1_rc (ZNF317_rc); m=1/1; ncol2=12; w=9; offset=1; strand=R; shift=1; score=0.502904; -wrTCTGCTGTyw
; cor=; Ncor=
a 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0
c 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0
g 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0
t 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0
|