One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m3_shift3 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m3_shift3 (dyads_m3dyads_m3)     
; dyads_m3 (dyads_m3dyads_m3); m=0 (reference); ncol1=10; shift=3; ncol=14; ---skCCCTGCys-
; Alignment reference
a	0	0	0	2544	2009	0	0	0	0	0	0	2825	1814	0
c	0	0	0	3747	2908	12387	12387	12387	0	0	12387	4807	4196	0
g	0	0	0	3260	4361	0	0	0	0	12387	0	1435	3790	0
t	0	0	0	2836	3109	0	0	0	12387	0	0	3320	2587	0
MA1648.1_shift2 (TCF12(var.2)) 
; dyads_m3 versus MA1648.1 (TCF12(var.2)); m=1/5; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.64839; --ssCACCTGCys-
; cor=; Ncor=
a	0	0	13014.0	14835.0	955.0	52529.0	744.0	1913.0	1380.0	2819.0	1089.0	13867.0	11414.0	0
c	0	0	19393.0	17594.0	57848.0	2007.0	55598.0	55765.0	3886.0	2088.0	55061.0	17603.0	18154.0	0
g	0	0	16996.0	18560.0	1186.0	5607.0	3780.0	3536.0	2625.0	55922.0	2314.0	14293.0	20060.0	0
t	0	0	12473.0	10887.0	1887.0	1733.0	1754.0	662.0	53985.0	1047.0	3412.0	16113.0	12248.0	0
MA1522.1_shift2 (MAZ) 
; dyads_m3 versus MA1522.1 (MAZ); m=2/5; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.644374; --ssCCCCTCCcc-
; cor=; Ncor=
a	0	0	2480.0	1819.0	17.0	49.0	36.0	39.0	6.0	90.0	23.0	1109.0	2016.0	0
c	0	0	5198.0	5068.0	14945.0	14630.0	14731.0	14676.0	0.0	14961.0	14944.0	9372.0	6775.0	0
g	0	0	4277.0	5163.0	75.0	384.0	290.0	347.0	130.0	8.0	96.0	1768.0	2539.0	0
t	0	0	3108.0	3013.0	26.0	0.0	6.0	1.0	14927.0	4.0	0.0	2814.0	3733.0	0
MA1628.1_rc_shift4 (Zic1::Zic2_rc) 
; dyads_m3 versus MA1628.1_rc (Zic1::Zic2_rc); m=3/5; ncol2=11; w=9; offset=1; strand=R; shift=4; score=0.58642; ----ysCCTGCTGb
; cor=; Ncor=
a	0	0	0	0	1708.0	2172.0	124.0	90.0	4.0	428.0	74.0	4.0	163.0	1473.0
c	0	0	0	0	3506.0	2775.0	9631.0	9279.0	627.0	96.0	9527.0	266.0	106.0	2773.0
g	0	0	0	0	2154.0	2516.0	91.0	512.0	311.0	9293.0	195.0	384.0	9594.0	2589.0
t	0	0	0	0	2524.0	2429.0	46.0	11.0	8950.0	75.0	96.0	9238.0	29.0	3057.0
MA1629.1_rc_shift3 (Zic2_rc) 
; dyads_m3 versus MA1629.1_rc (Zic2_rc); m=4/5; ncol2=14; w=10; offset=0; strand=R; shift=3; score=0.572381; ---cyyCCTGCTGt
; cor=; Ncor=
a	0	0	0	2104.0	1641.0	2472.0	154.0	410.0	441.0	298.0	67.0	268.0	120.0	2437.0
c	0	0	0	5314.0	4979.0	4911.0	11465.0	11184.0	735.0	269.0	11484.0	186.0	188.0	829.0
g	0	0	0	2168.0	1661.0	1476.0	204.0	133.0	118.0	11272.0	228.0	391.0	11476.0	1765.0
t	0	0	0	2333.0	3638.0	3060.0	96.0	192.0	10625.0	80.0	140.0	11074.0	135.0	6888.0
MA1102.2_rc_shift0 (CTCFL_rc) 
; dyads_m3 versus MA1102.2_rc (CTCFL_rc); m=5/5; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.536999; scGCCCCCTGsy--
; cor=; Ncor=
a	2198.0	1557.0	195.0	415.0	258.0	1122.0	242.0	185.0	25.0	1836.0	1251.0	3188.0	0	0
c	6341.0	9299.0	68.0	17001.0	16819.0	15425.0	16511.0	17285.0	329.0	2033.0	7094.0	4844.0	0	0
g	7727.0	3015.0	17593.0	270.0	767.0	1141.0	600.0	481.0	413.0	12867.0	7033.0	4180.0	0	0
t	1771.0	4166.0	181.0	351.0	193.0	349.0	684.0	86.0	17270.0	1301.0	2659.0	5825.0	0	0