One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m30/peak-motifs_dyads_m30.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m30/peak-motifs_dyads_m30_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m30_shift1 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m30_shift1 (dyads_m30dyads_m30) |
 |
|
|
; dyads_m30 (dyads_m30dyads_m30); m=0 (reference); ncol1=16; shift=1; ncol=17; -ssCCGcsssssCCGss
; Alignment reference
a 0 896 704 26 0 1 693 921 904 768 726 749 22 0 0 732 908
c 0 2754 2212 6396 6527 7 3545 2684 2169 2974 2886 1997 6444 6521 7 3445 2532
g 0 1817 2651 106 28 6546 1582 2088 2684 1841 1793 2687 66 34 6548 1765 2228
t 0 1088 988 27 0 1 735 862 798 972 1150 1122 23 0 0 613 887
|
| MA1513.1_shift0 (KLF15) |
 |
|
|
; dyads_m30 versus MA1513.1 (KLF15); m=1/2; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.468545; scCCCGCCCcs------
; cor=; Ncor=
a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 0
c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 0
g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 0
t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0 0
|
| MA0131.2_shift6 (HINFP) |
 |
|
|
; dyads_m30 versus MA0131.2 (HINFP); m=2/2; ncol2=12; w=11; offset=5; strand=D; shift=6; score=0.453753; ------carCGTCCGCg
; cor=; Ncor=
a 0 0 0 0 0 0 23.0 285.0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 85.0
c 0 0 0 0 0 0 340.0 131.0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 55.0
g 0 0 0 0 0 0 106.0 113.0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 188.0
t 0 0 0 0 0 0 100.0 53.0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 97.0
|