Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32.tf
		file1	1	11	2207
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m32 MA1108.2 dyads_m32dyads_m32 MXI1 0.919 0.835 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA0633.1 dyads_m32dyads_m32 Twist2 0.835 0.759 11 10 10 11 0.9091 0.9091 1.0000 R 1
dyads_m32 MA1570.1 dyads_m32dyads_m32 TFAP4(var.2) 0.779 0.709 11 10 10 11 0.9091 0.9091 1.0000 R 1
dyads_m32 MA0819.1 dyads_m32dyads_m32 CLOCK 0.771 0.701 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA1620.1 dyads_m32dyads_m32 Ptf1a(var.3) 0.765 0.701 11 12 11 12 0.9167 1.0000 0.9167 D 0
dyads_m32 MA0626.1 dyads_m32dyads_m32 Npas2 0.769 0.699 11 10 10 11 0.9091 0.9091 1.0000 R 1
dyads_m32 MA0461.2 dyads_m32dyads_m32 Atoh1 0.746 0.678 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA1493.1 dyads_m32dyads_m32 HES6 0.736 0.670 11 10 10 11 0.9091 0.9091 1.0000 R 1
dyads_m32 MA0669.1 dyads_m32dyads_m32 NEUROG2 0.736 0.669 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA1524.1 dyads_m32dyads_m32 MSGN1 0.728 0.667 11 12 11 12 0.9167 1.0000 0.9167 R 0
dyads_m32 MA0623.2 dyads_m32dyads_m32 NEUROG1 0.733 0.666 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA1558.1 dyads_m32dyads_m32 SNAI1 0.727 0.661 11 10 10 11 0.9091 0.9091 1.0000 R 1
dyads_m32 MA0058.3 dyads_m32dyads_m32 MAX 0.718 0.653 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA1468.1 dyads_m32dyads_m32 ATOH7 0.715 0.650 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA1638.1 dyads_m32dyads_m32 HAND2 0.709 0.645 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA0823.1 dyads_m32dyads_m32 HEY1 0.708 0.643 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA0825.1 dyads_m32dyads_m32 MNT 0.707 0.643 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA0820.1 dyads_m32dyads_m32 FIGLA 0.702 0.638 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m32 MA1618.1 dyads_m32dyads_m32 Ptf1a 0.751 0.635 11 13 11 13 0.8462 1.0000 0.8462 D 0
dyads_m32 MA1642.1 dyads_m32dyads_m32 NEUROG2(var.2) 0.739 0.625 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m32 MA1109.1 dyads_m32dyads_m32 NEUROD1 0.718 0.607 11 13 11 13 0.8462 1.0000 0.8462 D 0
dyads_m32 MA1621.1 dyads_m32dyads_m32 Rbpjl 0.764 0.600 11 14 11 14 0.7857 1.0000 0.7857 D -1
dyads_m32 MA0103.3 dyads_m32dyads_m32 ZEB1 0.709 0.590 11 11 10 12 0.8333 0.9091 0.9091 D 1
dyads_m32 MA0607.1 dyads_m32dyads_m32 Bhlha15 0.784 0.570 11 8 8 11 0.7273 0.7273 1.0000 R 2
dyads_m32 MA0526.3 dyads_m32dyads_m32 USF2 0.718 0.564 11 14 11 14 0.7857 1.0000 0.7857 R -1
dyads_m32 MA0093.3 dyads_m32dyads_m32 USF1 0.712 0.559 11 14 11 14 0.7857 1.0000 0.7857 R -1
dyads_m32 MA0622.1 dyads_m32dyads_m32 Mlxip 0.756 0.550 11 8 8 11 0.7273 0.7273 1.0000 R 2
dyads_m32 MA0806.1 dyads_m32dyads_m32 TBX4 0.732 0.533 11 8 8 11 0.7273 0.7273 1.0000 R 0
dyads_m32 MA0807.1 dyads_m32dyads_m32 TBX5 0.731 0.531 11 8 8 11 0.7273 0.7273 1.0000 R 0
dyads_m32 MA0831.2 dyads_m32dyads_m32 TFE3 0.717 0.521 11 8 8 11 0.7273 0.7273 1.0000 D 3
dyads_m32 MA0805.1 dyads_m32dyads_m32 TBX1 0.709 0.516 11 8 8 11 0.7273 0.7273 1.0000 R 0
dyads_m32 MA0802.1 dyads_m32dyads_m32 TBR1 0.726 0.447 11 10 8 13 0.6154 0.7273 0.8000 R -2
dyads_m32 MA0861.1 dyads_m32dyads_m32 TP73 0.705 0.431 11 18 11 18 0.6111 1.0000 0.6111 R -7
dyads_m32 MA0004.1 dyads_m32dyads_m32 Arnt 0.760 0.415 11 6 6 11 0.5455 0.5455 1.0000 R 3 
 Host name	pedagogix
 Job started	2020-04-14.171655
 Job done	2020-04-14.171731
 Seconds	5.42
	user	5.42
	system	0.57
	cuser	28.15
;	csystem	1.94