One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m32_shift7 ; 35 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m32_shift7 (dyads_m32dyads_m32)
; dyads_m32 (dyads_m32dyads_m32); m=0 (reference); ncol1=11; shift=7; ncol=18; -------rcACACATGys ; Alignment reference a 0 0 0 0 0 0 0 639 447 2207 22 2167 21 2148 0 70 361 530 c 0 0 0 0 0 0 0 435 836 0 2119 5 2095 0 59 19 750 632 g 0 0 0 0 0 0 0 685 522 0 4 35 7 59 0 2080 533 579 t 0 0 0 0 0 0 0 448 402 0 62 0 84 0 2148 38 563 466

MA1108.2_shift8 (MXI1)
; dyads_m32 versus MA1108.2 (MXI1); m=1/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.835131; --------rvCACATGkc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 c 0 0 0 0 0 0 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 g 0 0 0 0 0 0 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 t 0 0 0 0 0 0 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0

MA0633.1_rc_shift8 (Twist2_rc)
; dyads_m32 versus MA0633.1_rc (Twist2_rc); m=2/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.758926; --------mACATATGky ; cor=; Ncor= a 0 0 0 0 0 0 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 c 0 0 0 0 0 0 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 g 0 0 0 0 0 0 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 t 0 0 0 0 0 0 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0

MA1570.1_rc_shift8 (TFAP4(var.2)_rc)
; dyads_m32 versus MA1570.1_rc (TFAP4(var.2)_rc); m=3/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.708533; --------amCAyrTGdt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 c 0 0 0 0 0 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 g 0 0 0 0 0 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 t 0 0 0 0 0 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0

MA0819.1_shift8 (CLOCK)
; dyads_m32 versus MA0819.1 (CLOCK); m=4/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.701184; --------aACACGTGty ; cor=; Ncor= a 0 0 0 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 c 0 0 0 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 g 0 0 0 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 t 0 0 0 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0

MA1620.1_shift7 (Ptf1a(var.3))
; dyads_m32 versus MA1620.1 (Ptf1a(var.3)); m=5/34; ncol2=12; w=11; offset=0; strand=D; shift=7; score=0.700823; -------rmaCACCTGtk ; cor=; Ncor= a 0 0 0 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 c 0 0 0 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 g 0 0 0 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 t 0 0 0 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0

MA0626.1_rc_shift8 (Npas2_rc)
; dyads_m32 versus MA0626.1_rc (Npas2_rc); m=6/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.699217; --------kaCACGTGsh ; cor=; Ncor= a 0 0 0 0 0 0 0 0 202.0 566.0 0.0 999.0 0.0 0.0 0.0 0.0 48.0 257.0 c 0 0 0 0 0 0 0 0 202.0 188.0 918.0 0.0 918.0 0.0 0.0 0.0 420.0 293.0 g 0 0 0 0 0 0 0 0 299.0 172.0 0.0 0.0 0.0 918.0 0.0 999.0 377.0 177.0 t 0 0 0 0 0 0 0 0 297.0 74.0 81.0 0.0 81.0 81.0 999.0 0.0 154.0 273.0

MA0461.2_shift8 (Atoh1)
; dyads_m32 versus MA0461.2 (Atoh1); m=7/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.677901; --------rmCATATGky ; cor=; Ncor= a 0 0 0 0 0 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 c 0 0 0 0 0 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 g 0 0 0 0 0 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 t 0 0 0 0 0 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0

MA1493.1_rc_shift8 (HES6_rc)
; dyads_m32 versus MA1493.1_rc (HES6_rc); m=8/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.669539; --------rACACGTGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 c 0 0 0 0 0 0 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 g 0 0 0 0 0 0 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 t 0 0 0 0 0 0 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0

MA0669.1_shift8 (NEUROG2)
; dyads_m32 versus MA0669.1 (NEUROG2); m=9/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.669458; --------raCATATGtY ; cor=; Ncor= a 0 0 0 0 0 0 0 0 246.0 426.0 1.0 426.0 4.0 426.0 5.0 0.0 3.0 0.0 c 0 0 0 0 0 0 0 0 2.0 150.0 426.0 0.0 5.0 8.0 3.0 0.0 170.0 307.0 g 0 0 0 0 0 0 0 0 180.0 65.0 0.0 3.0 20.0 5.0 0.0 426.0 147.0 0.0 t 0 0 0 0 0 0 0 0 0.0 0.0 5.0 0.0 426.0 0.0 426.0 0.0 426.0 119.0

MA1524.1_rc_shift7 (MSGN1_rc)
; dyads_m32 versus MA1524.1_rc (MSGN1_rc); m=10/34; ncol2=12; w=11; offset=0; strand=R; shift=7; score=0.667158; -------srmCAwwTGGy ; cor=; Ncor= a 0 0 0 0 0 0 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 c 0 0 0 0 0 0 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 g 0 0 0 0 0 0 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 t 0 0 0 0 0 0 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0

MA0623.2_shift8 (NEUROG1)
; dyads_m32 versus MA0623.2 (NEUROG1); m=11/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.666064; --------raCATATGky ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1658.0 1898.0 0.0 3518.0 4.0 3518.0 0.0 0.0 23.0 68.0 c 0 0 0 0 0 0 0 0 118.0 876.0 3518.0 0.0 114.0 0.0 86.0 0.0 655.0 1844.0 g 0 0 0 0 0 0 0 0 1860.0 729.0 8.0 63.0 0.0 80.0 0.0 3518.0 907.0 187.0 t 0 0 0 0 0 0 0 0 33.0 14.0 0.0 0.0 3518.0 0.0 3518.0 0.0 1933.0 1673.0

MA1558.1_rc_shift8 (SNAI1_rc)
; dyads_m32 versus MA1558.1_rc (SNAI1_rc); m=12/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.661019; --------yrCACCTGyh ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 c 0 0 0 0 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 g 0 0 0 0 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 t 0 0 0 0 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0

MA0058.3_shift8 (MAX)
; dyads_m32 versus MA0058.3 (MAX); m=13/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.652878; --------amCACGTGcy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 c 0 0 0 0 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 g 0 0 0 0 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 t 0 0 0 0 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0

MA1468.1_shift8 (ATOH7)
; dyads_m32 versus MA1468.1 (ATOH7); m=14/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.650183; --------AmCATATGky ; cor=; Ncor= a 0 0 0 0 0 0 0 0 712.0 302.0 0.0 712.0 15.0 712.0 0.0 0.0 5.0 17.0 c 0 0 0 0 0 0 0 0 97.0 211.0 712.0 0.0 106.0 180.0 25.0 0.0 155.0 400.0 g 0 0 0 0 0 0 0 0 142.0 154.0 0.0 102.0 59.0 78.0 25.0 712.0 261.0 2.0 t 0 0 0 0 0 0 0 0 62.0 45.0 0.0 58.0 712.0 0.0 712.0 0.0 291.0 312.0

MA1638.1_shift8 (HAND2)
; dyads_m32 versus MA1638.1 (HAND2); m=15/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.64473; --------amCAGATGby ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 c 0 0 0 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 g 0 0 0 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 t 0 0 0 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0

MA0823.1_shift8 (HEY1)
; dyads_m32 versus MA0823.1 (HEY1); m=16/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.643388; --------grCACGTGyc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 c 0 0 0 0 0 0 0 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 g 0 0 0 0 0 0 0 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 t 0 0 0 0 0 0 0 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0

MA0825.1_shift8 (MNT)
; dyads_m32 versus MA0825.1 (MNT); m=17/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.643168; --------avCACGTGcy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 c 0 0 0 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 g 0 0 0 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 t 0 0 0 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0

MA0820.1_shift8 (FIGLA)
; dyads_m32 versus MA0820.1 (FIGLA); m=18/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.638157; --------wmCACCTGkw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 c 0 0 0 0 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 g 0 0 0 0 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 t 0 0 0 0 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0

MA1618.1_shift7 (Ptf1a)
; dyads_m32 versus MA1618.1 (Ptf1a); m=19/34; ncol2=13; w=11; offset=0; strand=D; shift=7; score=0.635394; -------dmaCAGATGtt ; cor=; Ncor= a 0 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 c 0 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 g 0 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 t 0 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0

MA1642.1_shift6 (NEUROG2(var.2))
; dyads_m32 versus MA1642.1 (NEUROG2(var.2)); m=20/34; ncol2=13; w=11; offset=-1; strand=D; shift=6; score=0.62503; ------rrraCAGATGGy ; cor=; Ncor= a 0 0 0 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 c 0 0 0 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 g 0 0 0 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 t 0 0 0 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0

MA1109.1_shift7 (NEUROD1)
; dyads_m32 versus MA1109.1 (NEUROD1); m=21/34; ncol2=13; w=11; offset=0; strand=D; shift=7; score=0.607146; -------graCAGATGGy ; cor=; Ncor= a 0 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 c 0 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 g 0 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 t 0 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0

MA1621.1_shift6 (Rbpjl)
; dyads_m32 versus MA1621.1 (Rbpjl); m=22/34; ncol2=14; w=11; offset=-1; strand=D; shift=6; score=0.600048; ------svmaCACCTGts ; cor=; Ncor= a 0 0 0 0 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 c 0 0 0 0 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 g 0 0 0 0 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 t 0 0 0 0 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0

MA0103.3_shift8 (ZEB1)
; dyads_m32 versus MA0103.3 (ZEB1); m=23/34; ncol2=11; w=10; offset=1; strand=D; shift=8; score=0.590431; --------ssCACCTGss ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 c 0 0 0 0 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 g 0 0 0 0 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 t 0 0 0 0 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0

MA0607.1_rc_shift9 (Bhlha15_rc)
; dyads_m32 versus MA0607.1_rc (Bhlha15_rc); m=24/34; ncol2=8; w=8; offset=2; strand=R; shift=9; score=0.570239; ---------aCATATGs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 c 0 0 0 0 0 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 g 0 0 0 0 0 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 t 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0

MA0526.3_rc_shift6 (USF2_rc)
; dyads_m32 versus MA0526.3_rc (USF2_rc); m=25/34; ncol2=14; w=11; offset=-1; strand=R; shift=6; score=0.563946; ------drGTCACrTGaC ; cor=; Ncor= a 0 0 0 0 0 0 10723.0 12023.0 5894.0 1545.0 344.0 37165.0 273.0 25017.0 410.0 371.0 25843.0 1846.0 c 0 0 0 0 0 0 7667.0 4691.0 2401.0 3248.0 36978.0 498.0 35413.0 1910.0 329.0 525.0 3097.0 26611.0 g 0 0 0 0 0 0 9793.0 13806.0 28475.0 2132.0 560.0 198.0 788.0 10979.0 546.0 36957.0 6524.0 3199.0 t 0 0 0 0 0 0 10035.0 7698.0 1448.0 31293.0 336.0 357.0 1744.0 312.0 36933.0 365.0 2754.0 6562.0

MA0093.3_rc_shift6 (USF1_rc)
; dyads_m32 versus MA0093.3_rc (USF1_rc); m=26/34; ncol2=14; w=11; offset=-1; strand=R; shift=6; score=0.559126; ------drGTCACATGAC ; cor=; Ncor= a 0 0 0 0 0 0 16439.0 17655.0 9021.0 2023.0 480.0 54021.0 418.0 38065.0 549.0 499.0 38038.0 1636.0 c 0 0 0 0 0 0 10333.0 6943.0 3018.0 4679.0 53634.0 601.0 50076.0 3666.0 477.0 766.0 3912.0 43094.0 g 0 0 0 0 0 0 14475.0 19456.0 41450.0 3045.0 817.0 264.0 1387.0 13185.0 654.0 53536.0 9543.0 3030.0 t 0 0 0 0 0 0 14087.0 11280.0 1845.0 45587.0 403.0 448.0 3453.0 418.0 53654.0 533.0 3841.0 7574.0

MA0622.1_rc_shift9 (Mlxip_rc)
; dyads_m32 versus MA0622.1_rc (Mlxip_rc); m=27/34; ncol2=8; w=8; offset=2; strand=R; shift=9; score=0.550065; ---------mCACGTGv- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 c 0 0 0 0 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 g 0 0 0 0 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 t 0 0 0 0 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0

MA0806.1_rc_shift7 (TBX4_rc)
; dyads_m32 versus MA0806.1_rc (TBX4_rc); m=28/34; ncol2=8; w=8; offset=0; strand=R; shift=7; score=0.532725; -------TcACACCT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 c 0 0 0 0 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 g 0 0 0 0 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 t 0 0 0 0 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0

MA0807.1_rc_shift7 (TBX5_rc)
; dyads_m32 versus MA0807.1_rc (TBX5_rc); m=29/34; ncol2=8; w=8; offset=0; strand=R; shift=7; score= 0.5315; -------TmACACCT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 c 0 0 0 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 g 0 0 0 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 t 0 0 0 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0

MA0831.2_shift10 (TFE3)
; dyads_m32 versus MA0831.2 (TFE3); m=30/34; ncol2=8; w=8; offset=3; strand=D; shift=10; score=0.521385; ----------CACGTGAy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1.0 719.0 1.0 129.0 4.0 1.0 815.0 3.0 c 0 0 0 0 0 0 0 0 0 0 996.0 34.0 830.0 9.0 4.0 1.0 77.0 522.0 g 0 0 0 0 0 0 0 0 0 0 1.0 109.0 5.0 861.0 4.0 997.0 70.0 37.0 t 0 0 0 0 0 0 0 0 0 0 1.0 138.0 164.0 1.0 988.0 1.0 38.0 438.0

MA0805.1_rc_shift7 (TBX1_rc)
; dyads_m32 versus MA0805.1_rc (TBX1_rc); m=31/34; ncol2=8; w=8; offset=0; strand=R; shift=7; score=0.515568; -------TCACACCT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 c 0 0 0 0 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 g 0 0 0 0 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 t 0 0 0 0 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0

MA0802.1_rc_shift5 (TBR1_rc)
; dyads_m32 versus MA0802.1_rc (TBR1_rc); m=32/34; ncol2=10; w=8; offset=-2; strand=R; shift=5; score=0.44656; -----tTTCACACCT--- ; cor=; Ncor= a 0 0 0 0 0 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 c 0 0 0 0 0 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 g 0 0 0 0 0 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 t 0 0 0 0 0 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0

MA0861.1_rc_shift0 (TP73_rc)
; dyads_m32 versus MA0861.1_rc (TP73_rc); m=33/34; ncol2=18; w=11; offset=-7; strand=R; shift=0; score=0.431113; krCrTGTyyrgACATGyh ; cor=; Ncor= a 2232.0 6995.0 39.0 8476.0 2302.0 0.0 442.0 1002.0 2457.0 4242.0 2749.0 11892.0 1.0 11480.0 198.0 0.0 208.0 3689.0 c 519.0 181.0 13026.0 130.0 279.0 0.0 1414.0 7797.0 3558.0 2230.0 783.0 91.0 11787.0 806.0 557.0 0.0 3304.0 3891.0 g 5125.0 6944.0 170.0 5965.0 143.0 11703.0 145.0 441.0 2418.0 2940.0 8161.0 2591.0 28.0 293.0 124.0 10829.0 429.0 313.0 t 4008.0 993.0 16.0 256.0 10125.0 0.0 9639.0 3988.0 3488.0 2166.0 1377.0 130.0 8.0 3837.0 8760.0 0.0 6206.0 3617.0

MA0004.1_rc_shift10 (Arnt_rc)
; dyads_m32 versus MA0004.1_rc (Arnt_rc); m=34/34; ncol2=6; w=6; offset=3; strand=R; shift=10; score=0.414606; ----------CACGTG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0.0 20.0 0.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0 0 0 20.0 0.0 20.0 0.0 1.0 0.0 0 0 g 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 20.0 0.0 16.0 0 0 t 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 19.0 4.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m32_shift7 (dyads_m32dyads_m32)				; dyads_m32 (dyads_m32dyads_m32); m=0 (reference); ncol1=11; shift=7; ncol=18; -------rcACACATGys ; Alignment reference a 0 0 0 0 0 0 0 639 447 2207 22 2167 21 2148 0 70 361 530 c 0 0 0 0 0 0 0 435 836 0 2119 5 2095 0 59 19 750 632 g 0 0 0 0 0 0 0 685 522 0 4 35 7 59 0 2080 533 579 t 0 0 0 0 0 0 0 448 402 0 62 0 84 0 2148 38 563 466
MA1108.2_shift8 (MXI1)				; dyads_m32 versus MA1108.2 (MXI1); m=1/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.835131; --------rvCACATGkc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 c 0 0 0 0 0 0 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 g 0 0 0 0 0 0 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 t 0 0 0 0 0 0 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0
MA0633.1_rc_shift8 (Twist2_rc)				; dyads_m32 versus MA0633.1_rc (Twist2_rc); m=2/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.758926; --------mACATATGky ; cor=; Ncor= a 0 0 0 0 0 0 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 c 0 0 0 0 0 0 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 g 0 0 0 0 0 0 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 t 0 0 0 0 0 0 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0
MA1570.1_rc_shift8 (TFAP4(var.2)_rc)				; dyads_m32 versus MA1570.1_rc (TFAP4(var.2)_rc); m=3/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.708533; --------amCAyrTGdt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 c 0 0 0 0 0 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 g 0 0 0 0 0 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 t 0 0 0 0 0 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0
MA0819.1_shift8 (CLOCK)				; dyads_m32 versus MA0819.1 (CLOCK); m=4/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.701184; --------aACACGTGty ; cor=; Ncor= a 0 0 0 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 c 0 0 0 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 g 0 0 0 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 t 0 0 0 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0
MA1620.1_shift7 (Ptf1a(var.3))				; dyads_m32 versus MA1620.1 (Ptf1a(var.3)); m=5/34; ncol2=12; w=11; offset=0; strand=D; shift=7; score=0.700823; -------rmaCACCTGtk ; cor=; Ncor= a 0 0 0 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 c 0 0 0 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 g 0 0 0 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 t 0 0 0 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0
MA0626.1_rc_shift8 (Npas2_rc)				; dyads_m32 versus MA0626.1_rc (Npas2_rc); m=6/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.699217; --------kaCACGTGsh ; cor=; Ncor= a 0 0 0 0 0 0 0 0 202.0 566.0 0.0 999.0 0.0 0.0 0.0 0.0 48.0 257.0 c 0 0 0 0 0 0 0 0 202.0 188.0 918.0 0.0 918.0 0.0 0.0 0.0 420.0 293.0 g 0 0 0 0 0 0 0 0 299.0 172.0 0.0 0.0 0.0 918.0 0.0 999.0 377.0 177.0 t 0 0 0 0 0 0 0 0 297.0 74.0 81.0 0.0 81.0 81.0 999.0 0.0 154.0 273.0
MA0461.2_shift8 (Atoh1)				; dyads_m32 versus MA0461.2 (Atoh1); m=7/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.677901; --------rmCATATGky ; cor=; Ncor= a 0 0 0 0 0 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 c 0 0 0 0 0 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 g 0 0 0 0 0 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 t 0 0 0 0 0 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0
MA1493.1_rc_shift8 (HES6_rc)				; dyads_m32 versus MA1493.1_rc (HES6_rc); m=8/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.669539; --------rACACGTGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 c 0 0 0 0 0 0 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 g 0 0 0 0 0 0 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 t 0 0 0 0 0 0 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0
MA0669.1_shift8 (NEUROG2)				; dyads_m32 versus MA0669.1 (NEUROG2); m=9/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.669458; --------raCATATGtY ; cor=; Ncor= a 0 0 0 0 0 0 0 0 246.0 426.0 1.0 426.0 4.0 426.0 5.0 0.0 3.0 0.0 c 0 0 0 0 0 0 0 0 2.0 150.0 426.0 0.0 5.0 8.0 3.0 0.0 170.0 307.0 g 0 0 0 0 0 0 0 0 180.0 65.0 0.0 3.0 20.0 5.0 0.0 426.0 147.0 0.0 t 0 0 0 0 0 0 0 0 0.0 0.0 5.0 0.0 426.0 0.0 426.0 0.0 426.0 119.0
MA1524.1_rc_shift7 (MSGN1_rc)				; dyads_m32 versus MA1524.1_rc (MSGN1_rc); m=10/34; ncol2=12; w=11; offset=0; strand=R; shift=7; score=0.667158; -------srmCAwwTGGy ; cor=; Ncor= a 0 0 0 0 0 0 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 c 0 0 0 0 0 0 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 g 0 0 0 0 0 0 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 t 0 0 0 0 0 0 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0
MA0623.2_shift8 (NEUROG1)				; dyads_m32 versus MA0623.2 (NEUROG1); m=11/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.666064; --------raCATATGky ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1658.0 1898.0 0.0 3518.0 4.0 3518.0 0.0 0.0 23.0 68.0 c 0 0 0 0 0 0 0 0 118.0 876.0 3518.0 0.0 114.0 0.0 86.0 0.0 655.0 1844.0 g 0 0 0 0 0 0 0 0 1860.0 729.0 8.0 63.0 0.0 80.0 0.0 3518.0 907.0 187.0 t 0 0 0 0 0 0 0 0 33.0 14.0 0.0 0.0 3518.0 0.0 3518.0 0.0 1933.0 1673.0
MA1558.1_rc_shift8 (SNAI1_rc)				; dyads_m32 versus MA1558.1_rc (SNAI1_rc); m=12/34; ncol2=10; w=10; offset=1; strand=R; shift=8; score=0.661019; --------yrCACCTGyh ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 c 0 0 0 0 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 g 0 0 0 0 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 t 0 0 0 0 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0
MA0058.3_shift8 (MAX)				; dyads_m32 versus MA0058.3 (MAX); m=13/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.652878; --------amCACGTGcy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 c 0 0 0 0 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 g 0 0 0 0 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 t 0 0 0 0 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0
MA1468.1_shift8 (ATOH7)				; dyads_m32 versus MA1468.1 (ATOH7); m=14/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.650183; --------AmCATATGky ; cor=; Ncor= a 0 0 0 0 0 0 0 0 712.0 302.0 0.0 712.0 15.0 712.0 0.0 0.0 5.0 17.0 c 0 0 0 0 0 0 0 0 97.0 211.0 712.0 0.0 106.0 180.0 25.0 0.0 155.0 400.0 g 0 0 0 0 0 0 0 0 142.0 154.0 0.0 102.0 59.0 78.0 25.0 712.0 261.0 2.0 t 0 0 0 0 0 0 0 0 62.0 45.0 0.0 58.0 712.0 0.0 712.0 0.0 291.0 312.0
MA1638.1_shift8 (HAND2)				; dyads_m32 versus MA1638.1 (HAND2); m=15/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.64473; --------amCAGATGby ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 c 0 0 0 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 g 0 0 0 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 t 0 0 0 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0
MA0823.1_shift8 (HEY1)				; dyads_m32 versus MA0823.1 (HEY1); m=16/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.643388; --------grCACGTGyc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 c 0 0 0 0 0 0 0 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 g 0 0 0 0 0 0 0 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 t 0 0 0 0 0 0 0 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0
MA0825.1_shift8 (MNT)				; dyads_m32 versus MA0825.1 (MNT); m=17/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.643168; --------avCACGTGcy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 c 0 0 0 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 g 0 0 0 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 t 0 0 0 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0
MA0820.1_shift8 (FIGLA)				; dyads_m32 versus MA0820.1 (FIGLA); m=18/34; ncol2=10; w=10; offset=1; strand=D; shift=8; score=0.638157; --------wmCACCTGkw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 c 0 0 0 0 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 g 0 0 0 0 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 t 0 0 0 0 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0
MA1618.1_shift7 (Ptf1a)				; dyads_m32 versus MA1618.1 (Ptf1a); m=19/34; ncol2=13; w=11; offset=0; strand=D; shift=7; score=0.635394; -------dmaCAGATGtt ; cor=; Ncor= a 0 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 c 0 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 g 0 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 t 0 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0
MA1642.1_shift6 (NEUROG2(var.2))				; dyads_m32 versus MA1642.1 (NEUROG2(var.2)); m=20/34; ncol2=13; w=11; offset=-1; strand=D; shift=6; score=0.62503; ------rrraCAGATGGy ; cor=; Ncor= a 0 0 0 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 c 0 0 0 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 g 0 0 0 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 t 0 0 0 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0
MA1109.1_shift7 (NEUROD1)				; dyads_m32 versus MA1109.1 (NEUROD1); m=21/34; ncol2=13; w=11; offset=0; strand=D; shift=7; score=0.607146; -------graCAGATGGy ; cor=; Ncor= a 0 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 c 0 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 g 0 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 t 0 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0
MA1621.1_shift6 (Rbpjl)				; dyads_m32 versus MA1621.1 (Rbpjl); m=22/34; ncol2=14; w=11; offset=-1; strand=D; shift=6; score=0.600048; ------svmaCACCTGts ; cor=; Ncor= a 0 0 0 0 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 c 0 0 0 0 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 g 0 0 0 0 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 t 0 0 0 0 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0
MA0103.3_shift8 (ZEB1)				; dyads_m32 versus MA0103.3 (ZEB1); m=23/34; ncol2=11; w=10; offset=1; strand=D; shift=8; score=0.590431; --------ssCACCTGss ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 c 0 0 0 0 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 g 0 0 0 0 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 t 0 0 0 0 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0
MA0607.1_rc_shift9 (Bhlha15_rc)				; dyads_m32 versus MA0607.1_rc (Bhlha15_rc); m=24/34; ncol2=8; w=8; offset=2; strand=R; shift=9; score=0.570239; ---------aCATATGs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 c 0 0 0 0 0 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 g 0 0 0 0 0 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 t 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0
MA0526.3_rc_shift6 (USF2_rc)				; dyads_m32 versus MA0526.3_rc (USF2_rc); m=25/34; ncol2=14; w=11; offset=-1; strand=R; shift=6; score=0.563946; ------drGTCACrTGaC ; cor=; Ncor= a 0 0 0 0 0 0 10723.0 12023.0 5894.0 1545.0 344.0 37165.0 273.0 25017.0 410.0 371.0 25843.0 1846.0 c 0 0 0 0 0 0 7667.0 4691.0 2401.0 3248.0 36978.0 498.0 35413.0 1910.0 329.0 525.0 3097.0 26611.0 g 0 0 0 0 0 0 9793.0 13806.0 28475.0 2132.0 560.0 198.0 788.0 10979.0 546.0 36957.0 6524.0 3199.0 t 0 0 0 0 0 0 10035.0 7698.0 1448.0 31293.0 336.0 357.0 1744.0 312.0 36933.0 365.0 2754.0 6562.0
MA0093.3_rc_shift6 (USF1_rc)				; dyads_m32 versus MA0093.3_rc (USF1_rc); m=26/34; ncol2=14; w=11; offset=-1; strand=R; shift=6; score=0.559126; ------drGTCACATGAC ; cor=; Ncor= a 0 0 0 0 0 0 16439.0 17655.0 9021.0 2023.0 480.0 54021.0 418.0 38065.0 549.0 499.0 38038.0 1636.0 c 0 0 0 0 0 0 10333.0 6943.0 3018.0 4679.0 53634.0 601.0 50076.0 3666.0 477.0 766.0 3912.0 43094.0 g 0 0 0 0 0 0 14475.0 19456.0 41450.0 3045.0 817.0 264.0 1387.0 13185.0 654.0 53536.0 9543.0 3030.0 t 0 0 0 0 0 0 14087.0 11280.0 1845.0 45587.0 403.0 448.0 3453.0 418.0 53654.0 533.0 3841.0 7574.0
MA0622.1_rc_shift9 (Mlxip_rc)				; dyads_m32 versus MA0622.1_rc (Mlxip_rc); m=27/34; ncol2=8; w=8; offset=2; strand=R; shift=9; score=0.550065; ---------mCACGTGv- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 c 0 0 0 0 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 g 0 0 0 0 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 t 0 0 0 0 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0
MA0806.1_rc_shift7 (TBX4_rc)				; dyads_m32 versus MA0806.1_rc (TBX4_rc); m=28/34; ncol2=8; w=8; offset=0; strand=R; shift=7; score=0.532725; -------TcACACCT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 c 0 0 0 0 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 g 0 0 0 0 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 t 0 0 0 0 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0
MA0807.1_rc_shift7 (TBX5_rc)				; dyads_m32 versus MA0807.1_rc (TBX5_rc); m=29/34; ncol2=8; w=8; offset=0; strand=R; shift=7; score= 0.5315; -------TmACACCT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 c 0 0 0 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 g 0 0 0 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 t 0 0 0 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0
MA0831.2_shift10 (TFE3)				; dyads_m32 versus MA0831.2 (TFE3); m=30/34; ncol2=8; w=8; offset=3; strand=D; shift=10; score=0.521385; ----------CACGTGAy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1.0 719.0 1.0 129.0 4.0 1.0 815.0 3.0 c 0 0 0 0 0 0 0 0 0 0 996.0 34.0 830.0 9.0 4.0 1.0 77.0 522.0 g 0 0 0 0 0 0 0 0 0 0 1.0 109.0 5.0 861.0 4.0 997.0 70.0 37.0 t 0 0 0 0 0 0 0 0 0 0 1.0 138.0 164.0 1.0 988.0 1.0 38.0 438.0
MA0805.1_rc_shift7 (TBX1_rc)				; dyads_m32 versus MA0805.1_rc (TBX1_rc); m=31/34; ncol2=8; w=8; offset=0; strand=R; shift=7; score=0.515568; -------TCACACCT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 c 0 0 0 0 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 g 0 0 0 0 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 t 0 0 0 0 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0
MA0802.1_rc_shift5 (TBR1_rc)				; dyads_m32 versus MA0802.1_rc (TBR1_rc); m=32/34; ncol2=10; w=8; offset=-2; strand=R; shift=5; score=0.44656; -----tTTCACACCT--- ; cor=; Ncor= a 0 0 0 0 0 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 c 0 0 0 0 0 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 g 0 0 0 0 0 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 t 0 0 0 0 0 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0
MA0861.1_rc_shift0 (TP73_rc)				; dyads_m32 versus MA0861.1_rc (TP73_rc); m=33/34; ncol2=18; w=11; offset=-7; strand=R; shift=0; score=0.431113; krCrTGTyyrgACATGyh ; cor=; Ncor= a 2232.0 6995.0 39.0 8476.0 2302.0 0.0 442.0 1002.0 2457.0 4242.0 2749.0 11892.0 1.0 11480.0 198.0 0.0 208.0 3689.0 c 519.0 181.0 13026.0 130.0 279.0 0.0 1414.0 7797.0 3558.0 2230.0 783.0 91.0 11787.0 806.0 557.0 0.0 3304.0 3891.0 g 5125.0 6944.0 170.0 5965.0 143.0 11703.0 145.0 441.0 2418.0 2940.0 8161.0 2591.0 28.0 293.0 124.0 10829.0 429.0 313.0 t 4008.0 993.0 16.0 256.0 10125.0 0.0 9639.0 3988.0 3488.0 2166.0 1377.0 130.0 8.0 3837.0 8760.0 0.0 6206.0 3617.0
MA0004.1_rc_shift10 (Arnt_rc)				; dyads_m32 versus MA0004.1_rc (Arnt_rc); m=34/34; ncol2=6; w=6; offset=3; strand=R; shift=10; score=0.414606; ----------CACGTG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0.0 20.0 0.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0 0 0 20.0 0.0 20.0 0.0 1.0 0.0 0 0 g 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 20.0 0.0 16.0 0 0 t 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 19.0 4.0 0 0