One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m33/peak-motifs_dyads_m33.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m33/peak-motifs_dyads_m33_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m33_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m33_shift0 (dyads_m33dyads_m33) |
 |
|
|
; dyads_m33 (dyads_m33dyads_m33); m=0 (reference); ncol1=13; shift=0; ncol=15; ssCGGsssCGCss--
; Alignment reference
a 724 644 0 0 26 1031 965 855 0 0 8 991 777 0 0
c 2639 2140 6664 19 185 2853 2309 2381 6662 0 6639 2254 2526 0 0
g 2327 3086 0 6645 6422 2072 2455 2614 2 6664 8 2452 2502 0 0
t 974 794 0 0 31 708 935 814 0 0 9 967 859 0 0
|
| MA0506.1_shift1 (NRF1) |
 |
|
|
; dyads_m33 versus MA0506.1 (NRF1); m=1/2; ncol2=11; w=11; offset=1; strand=D; shift=1; score=0.593657; -GCGCmTGCGCr---
; cor=; Ncor=
a 0 602.0 623.0 196.0 0.0 1514.0 0.0 0.0 0.0 0.0 74.0 2245.0 0 0 0
c 0 375.0 4001.0 189.0 4016.0 1862.0 403.0 0.0 4338.0 349.0 4550.0 804.0 0 0 0
g 0 3647.0 0.0 4239.0 468.0 935.0 528.0 4624.0 0.0 4275.0 0.0 1575.0 0 0 0
t 0 0.0 0.0 0.0 140.0 313.0 3693.0 0.0 286.0 0.0 0.0 0.0 0 0 0
|
| MA1513.1_shift4 (KLF15) |
 |
|
|
; dyads_m33 versus MA1513.1 (KLF15); m=2/2; ncol2=11; w=9; offset=4; strand=D; shift=4; score=0.43333; ----scCCCGCCCcs
; cor=; Ncor=
a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0
c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0
g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0
t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0
|