Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34.tf
		file1	1	10	6763
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m34 MA1116.1 dyads_m34dyads_m34 RBPJ 0.993 0.993 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m34 MA0606.1 dyads_m34dyads_m34 NFAT5 0.725 0.725 10 10 10 10 1.0000 1.0000 1.0000 R 0
dyads_m34 MA0519.1 dyads_m34dyads_m34 Stat5a::Stat5b 0.765 0.695 10 11 10 11 0.9091 1.0000 0.9091 R -1
dyads_m34 MA1601.1 dyads_m34dyads_m34 ZNF75D 0.841 0.688 10 10 9 11 0.8182 0.9000 0.9000 D -1
dyads_m34 MA1122.1 dyads_m34dyads_m34 TFDP1 0.713 0.648 10 11 10 11 0.9091 1.0000 0.9091 D -1
dyads_m34 MA0144.2 dyads_m34dyads_m34 STAT3 0.843 0.632 10 11 9 12 0.7500 0.9000 0.8182 D -2
dyads_m34 MA1625.1 dyads_m34dyads_m34 Stat5b 0.844 0.563 10 15 10 15 0.6667 1.0000 0.6667 R -4
dyads_m34 MA0137.3 dyads_m34dyads_m34 STAT1 0.743 0.557 10 11 9 12 0.7500 0.9000 0.8182 D -2
dyads_m34 MA0471.2 dyads_m34dyads_m34 E2F6 0.701 0.539 10 13 10 13 0.7692 1.0000 0.7692 D -3
dyads_m34 MA0518.1 dyads_m34dyads_m34 Stat4 0.740 0.529 10 14 10 14 0.7143 1.0000 0.7143 D -2
dyads_m34 MA0152.1 dyads_m34dyads_m34 NFATC2 0.714 0.500 10 7 7 10 0.7000 0.7000 1.0000 R 3
dyads_m34 MA1624.1 dyads_m34dyads_m34 Stat5a 0.703 0.487 10 12 9 13 0.6923 0.9000 0.7500 R -3
dyads_m34 MA1154.1 dyads_m34dyads_m34 ZNF282 0.815 0.480 10 17 10 17 0.5882 1.0000 0.5882 R -7
dyads_m34 MA0154.4 dyads_m34dyads_m34 EBF1 0.717 0.478 10 15 10 15 0.6667 1.0000 0.6667 R -5
dyads_m34 MA1573.1 dyads_m34dyads_m34 THAP11 0.848 0.446 10 19 10 19 0.5263 1.0000 0.5263 R -1
dyads_m34 MA1597.1 dyads_m34dyads_m34 ZNF528 0.726 0.427 10 17 10 17 0.5882 1.0000 0.5882 D -1 
 Host name	pedagogix
 Job started	2020-04-14.171736
 Job done	2020-04-14.171754
 Seconds	3.12
	user	3.12
	system	0.33
	cuser	13.56
;	csystem	0.89