Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35.tf
		file1	1	13	15126
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m35 MA0753.2 dyads_m35dyads_m35 ZNF740 0.751 0.751 13 13 13 13 1.0000 1.0000 1.0000 D 0
dyads_m35 MA0039.4 dyads_m35dyads_m35 KLF4 0.799 0.737 13 12 12 13 0.9231 0.9231 1.0000 D 1
dyads_m35 MA0746.2 dyads_m35dyads_m35 SP3 0.821 0.704 13 13 12 14 0.8571 0.9231 0.9231 D 1
dyads_m35 MA1515.1 dyads_m35dyads_m35 KLF2 0.822 0.695 13 11 11 13 0.8462 0.8462 1.0000 D 1
dyads_m35 MA1653.1 dyads_m35dyads_m35 ZNF148 0.750 0.692 13 12 12 13 0.9231 0.9231 1.0000 D 1
dyads_m35 MA0079.4 dyads_m35dyads_m35 SP1 0.797 0.690 13 15 13 15 0.8667 1.0000 0.8667 D -1
dyads_m35 MA0599.1 dyads_m35dyads_m35 KLF5 0.889 0.684 13 10 10 13 0.7692 0.7692 1.0000 D 2
dyads_m35 MA1516.1 dyads_m35dyads_m35 KLF3 0.808 0.684 13 11 11 13 0.8462 0.8462 1.0000 D 1
dyads_m35 MA1513.1 dyads_m35dyads_m35 KLF15 0.804 0.680 13 11 11 13 0.8462 0.8462 1.0000 D 2
dyads_m35 MA0741.1 dyads_m35dyads_m35 KLF16 0.802 0.679 13 11 11 13 0.8462 0.8462 1.0000 D 2
dyads_m35 MA0493.1 dyads_m35dyads_m35 Klf1 0.801 0.678 13 11 11 13 0.8462 0.8462 1.0000 D 1
dyads_m35 MA1511.1 dyads_m35dyads_m35 KLF10 0.781 0.661 13 11 11 13 0.8462 0.8462 1.0000 D 2
dyads_m35 MA1517.1 dyads_m35dyads_m35 KLF6 0.775 0.656 13 11 11 13 0.8462 0.8462 1.0000 D 1
dyads_m35 MA1512.1 dyads_m35dyads_m35 KLF11 0.760 0.643 13 11 11 13 0.8462 0.8462 1.0000 D 2
dyads_m35 MA1522.1 dyads_m35dyads_m35 MAZ 0.749 0.634 13 11 11 13 0.8462 0.8462 1.0000 D 1
dyads_m35 MA1107.2 dyads_m35dyads_m35 KLF9 0.766 0.622 13 16 13 16 0.8125 1.0000 0.8125 D 0
dyads_m35 MA0747.1 dyads_m35dyads_m35 SP8 0.790 0.621 13 12 11 14 0.7857 0.8462 0.9167 D 2
dyads_m35 MA0685.1 dyads_m35dyads_m35 SP4 0.807 0.617 13 17 13 17 0.7647 1.0000 0.7647 D -1
dyads_m35 MA1564.1 dyads_m35dyads_m35 SP9 0.779 0.612 13 12 11 14 0.7857 0.8462 0.9167 D 2
dyads_m35 MA0740.1 dyads_m35dyads_m35 KLF14 0.759 0.607 13 14 12 15 0.8000 0.9231 0.8571 D 1
dyads_m35 MA0516.2 dyads_m35dyads_m35 SP2 0.757 0.579 13 17 13 17 0.7647 1.0000 0.7647 D -2
dyads_m35 MA0742.1 dyads_m35dyads_m35 Klf12 0.770 0.577 13 15 12 16 0.7500 0.9231 0.8000 D 1
dyads_m35 MA0657.1 dyads_m35dyads_m35 KLF13 0.715 0.516 13 18 13 18 0.7222 1.0000 0.7222 D 0
dyads_m35 MA0597.1 dyads_m35dyads_m35 THAP1 0.841 0.480 13 9 8 14 0.5714 0.6154 0.8889 D 5
dyads_m35 MA0671.1 dyads_m35dyads_m35 NFIX 0.744 0.425 13 9 8 14 0.5714 0.6154 0.8889 D -1
dyads_m35 MA1578.1 dyads_m35dyads_m35 VEZF1 0.780 0.416 13 10 8 15 0.5333 0.6154 0.8000 D 5
dyads_m35 MA0162.4 dyads_m35dyads_m35 EGR1 0.705 0.415 13 14 10 17 0.5882 0.7692 0.7143 D 3 
 Host name	pedagogix
 Job started	2020-04-14.171755
 Job done	2020-04-14.171829
 Seconds	6.24
	user	6.24
	system	0.61
	cuser	25.88
;	csystem	1.6