Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37.tf
		file1	1	10	7991
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m37 MA0764.2 dyads_m37dyads_m37 ETV4 0.989 0.989 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m37 MA0645.1 dyads_m37dyads_m37 ETV6 0.771 0.771 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m37 MA0136.2 dyads_m37dyads_m37 ELF5 0.843 0.766 10 11 10 11 0.9091 1.0000 0.9091 D -1
dyads_m37 MA0765.2 dyads_m37dyads_m37 ETV5 0.803 0.730 10 11 10 11 0.9091 1.0000 0.9091 R 0
dyads_m37 MA0076.2 dyads_m37dyads_m37 ELK4 0.770 0.700 10 11 10 11 0.9091 1.0000 0.9091 R 0
dyads_m37 MA0640.2 dyads_m37dyads_m37 ELF3 0.909 0.649 10 14 10 14 0.7143 1.0000 0.7143 R -1
dyads_m37 MA0508.3 dyads_m37dyads_m37 PRDM1 0.703 0.639 10 11 10 11 0.9091 1.0000 0.9091 R -1
dyads_m37 MA0761.2 dyads_m37dyads_m37 ETV1 0.890 0.635 10 14 10 14 0.7143 1.0000 0.7143 D -2
dyads_m37 MA0473.3 dyads_m37dyads_m37 ELF1 0.878 0.627 10 14 10 14 0.7143 1.0000 0.7143 D -2
dyads_m37 MA0062.3 dyads_m37dyads_m37 GABPA 0.876 0.625 10 14 10 14 0.7143 1.0000 0.7143 R -2
dyads_m37 MA1508.1 dyads_m37dyads_m37 IKZF1 0.869 0.602 10 12 9 13 0.6923 0.9000 0.7500 D -3
dyads_m37 MA0750.2 dyads_m37dyads_m37 ZBTB7A 0.782 0.601 10 13 10 13 0.7692 1.0000 0.7692 D -1
dyads_m37 MA0598.3 dyads_m37dyads_m37 EHF 0.894 0.596 10 15 10 15 0.6667 1.0000 0.6667 R -3
dyads_m37 MA0687.1 dyads_m37dyads_m37 SPIC 0.803 0.574 10 14 10 14 0.7143 1.0000 0.7143 D -4
dyads_m37 MA0518.1 dyads_m37dyads_m37 Stat4 0.755 0.539 10 14 10 14 0.7143 1.0000 0.7143 D -3
dyads_m37 MA0520.1 dyads_m37dyads_m37 Stat6 0.787 0.525 10 15 10 15 0.6667 1.0000 0.6667 R -5
dyads_m37 MA1652.1 dyads_m37dyads_m37 ZKSCAN5 0.720 0.514 10 14 10 14 0.7143 1.0000 0.7143 D 0
dyads_m37 MA0081.2 dyads_m37dyads_m37 SPIB 0.808 0.505 10 16 10 16 0.6250 1.0000 0.6250 R -3
dyads_m37 MA0137.3 dyads_m37dyads_m37 STAT1 0.728 0.448 10 11 8 13 0.6154 0.8000 0.7273 D -3
dyads_m37 MA0149.1 dyads_m37dyads_m37 EWSR1-FLI1 0.794 0.441 10 18 10 18 0.5556 1.0000 0.5556 D -1
dyads_m37 MA0080.5 dyads_m37dyads_m37 SPI1 0.830 0.415 10 20 10 20 0.5000 1.0000 0.5000 D -5
dyads_m37 MA0101.1 dyads_m37dyads_m37 REL 0.761 0.410 10 10 7 13 0.5385 0.7000 0.7000 R 3
dyads_m37 MA0528.2 dyads_m37dyads_m37 ZNF263 0.714 0.408 10 12 8 14 0.5714 0.8000 0.6667 D -4 
 Host name	pedagogix
 Job started	2020-04-14.171832
 Job done	2020-04-14.171918
 Seconds	8
	user	8
	system	0.83
	cuser	36.03
;	csystem	1.55