One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m37/peak-motifs_dyads_m37_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m37_shift5 ; 24 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m37_shift5 (dyads_m37dyads_m37)     
; dyads_m37 (dyads_m37dyads_m37); m=0 (reference); ncol1=10; shift=5; ncol=20; -----gsAGGAAGsv-----
; Alignment reference
a	0	0	0	0	0	1977	1512	7991	0	0	7991	7991	0	1644	2234	0	0	0	0	0
c	0	0	0	0	0	1759	3305	0	0	0	0	0	0	2496	2142	0	0	0	0	0
g	0	0	0	0	0	2904	2426	0	7991	7991	0	0	7991	2494	2391	0	0	0	0	0
t	0	0	0	0	0	1351	748	0	0	0	0	0	0	1357	1224	0	0	0	0	0
MA0764.2_shift5 (ETV4) 
; dyads_m37 versus MA0764.2 (ETV4); m=1/23; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.988846; -----rcAGGAAGyr-----
; cor=; Ncor=
a	0	0	0	0	0	3119.0	1206.0	8353.0	0.0	1.0	8374.0	8333.0	11.0	1296.0	2336.0	0	0	0	0	0
c	0	0	0	0	0	1494.0	4608.0	61.0	92.0	1.0	0.0	73.0	28.0	2194.0	1597.0	0	0	0	0	0
g	0	0	0	0	0	2721.0	1936.0	0.0	8308.0	8345.0	0.0	0.0	8344.0	1949.0	3055.0	0	0	0	0	0
t	0	0	0	0	0	1080.0	664.0	0.0	14.0	67.0	40.0	8.0	31.0	2975.0	1426.0	0	0	0	0	0
MA0645.1_shift5 (ETV6) 
; dyads_m37 versus MA0645.1 (ETV6); m=2/23; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.771065; -----msCGGAAGTr-----
; cor=; Ncor=
a	0	0	0	0	0	9414.0	342.0	1476.0	7.0	21.0	6687.0	6687.0	768.0	184.0	2049.0	0	0	0	0	0
c	0	0	0	0	0	6562.0	2394.0	6379.0	0.0	0.0	0.0	13.0	52.0	834.0	342.0	0	0	0	0	0
g	0	0	0	0	0	4684.0	4292.0	397.0	6687.0	6687.0	7.0	32.0	6687.0	233.0	3205.0	0	0	0	0	0
t	0	0	0	0	0	2002.0	441.0	308.0	13.0	22.0	0.0	41.0	0.0	6687.0	1091.0	0	0	0	0	0
MA0136.2_shift4 (ELF5) 
; dyads_m37 versus MA0136.2 (ELF5); m=3/23; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.766342; ----acsmGGAAGtr-----
; cor=; Ncor=
a	0	0	0	0	2416.0	1221.0	987.0	1458.0	3.0	5.0	2699.0	2646.0	890.0	477.0	959.0	0	0	0	0	0
c	0	0	0	0	252.0	2298.0	2453.0	2528.0	0.0	0.0	11.0	61.0	155.0	716.0	371.0	0	0	0	0	0
g	0	0	0	0	301.0	955.0	1266.0	309.0	3307.0	3315.0	1.0	0.0	2857.0	312.0	762.0	0	0	0	0	0
t	0	0	0	0	793.0	866.0	97.0	56.0	20.0	25.0	4.0	245.0	84.0	2470.0	663.0	0	0	0	0	0
MA0765.2_rc_shift5 (ETV5_rc) 
; dyads_m37 versus MA0765.2_rc (ETV5_rc); m=4/23; ncol2=11; w=10; offset=0; strand=R; shift=5; score=0.729585; -----rsCGGAAGTgv----
; cor=; Ncor=
a	0	0	0	0	0	7222.0	4436.0	4523.0	392.0	255.0	24324.0	23722.0	971.0	1448.0	5100.0	6667.0	0	0	0	0
c	0	0	0	0	0	6039.0	11944.0	18757.0	498.0	336.0	816.0	408.0	994.0	3017.0	6129.0	7117.0	0	0	0	0
g	0	0	0	0	0	8378.0	6921.0	1743.0	25061.0	25484.0	956.0	1145.0	24041.0	2443.0	10307.0	8003.0	0	0	0	0
t	0	0	0	0	0	4679.0	3017.0	1295.0	367.0	243.0	222.0	1043.0	312.0	19410.0	4782.0	4531.0	0	0	0	0
MA0076.2_rc_shift5 (ELK4_rc) 
; dyads_m37 versus MA0076.2_rc (ELK4_rc); m=5/23; ncol2=11; w=10; offset=0; strand=R; shift=5; score=0.699552; -----rCCGGAAGygs----
; cor=; Ncor=
a	0	0	0	0	0	1216.0	83.0	512.0	0.0	0.0	3427.0	3419.0	723.0	210.0	561.0	785.0	0	0	0	0
c	0	0	0	0	0	668.0	2843.0	2915.0	0.0	0.0	0.0	0.0	16.0	1038.0	570.0	886.0	0	0	0	0
g	0	0	0	0	0	1253.0	501.0	0.0	3427.0	3427.0	0.0	0.0	2688.0	145.0	1905.0	1458.0	0	0	0	0
t	0	0	0	0	0	290.0	0.0	0.0	0.0	0.0	0.0	8.0	0.0	2034.0	391.0	298.0	0	0	0	0
MA0640.2_rc_shift4 (ELF3_rc) 
; dyads_m37 versus MA0640.2_rc (ELF3_rc); m=6/23; ncol2=14; w=10; offset=-1; strand=R; shift=4; score=0.649371; ----avcAGGAAGTggrr--
; cor=; Ncor=
a	0	0	0	0	22757.0	12256.0	8528.0	44422.0	475.0	793.0	46173.0	45195.0	4633.0	3204.0	9951.0	11157.0	13593.0	13889.0	0	0
c	0	0	0	0	6001.0	13945.0	28319.0	1989.0	473.0	566.0	954.0	768.0	1365.0	2615.0	4122.0	6930.0	11894.0	10255.0	0	0
g	0	0	0	0	9085.0	13291.0	9278.0	1315.0	47107.0	46481.0	943.0	1368.0	41950.0	2040.0	27973.0	24731.0	13181.0	12661.0	0	0
t	0	0	0	0	10659.0	9010.0	2377.0	776.0	447.0	662.0	432.0	1171.0	554.0	40643.0	6456.0	5684.0	9834.0	11697.0	0	0
MA0508.3_rc_shift4 (PRDM1_rc) 
; dyads_m37 versus MA0508.3_rc (PRDM1_rc); m=7/23; ncol2=11; w=10; offset=-1; strand=R; shift=4; score=0.639298; ----raGAGAAAGwr-----
; cor=; Ncor=
a	0	0	0	0	19978.0	27294.0	660.0	49466.0	432.0	52619.0	50943.0	52905.0	829.0	17272.0	22293.0	0	0	0	0	0
c	0	0	0	0	7861.0	4098.0	290.0	1390.0	207.0	561.0	1011.0	826.0	701.0	8768.0	6638.0	0	0	0	0	0
g	0	0	0	0	17518.0	13567.0	52821.0	1076.0	53465.0	488.0	1346.0	467.0	52752.0	12288.0	17788.0	0	0	0	0	0
t	0	0	0	0	10124.0	10522.0	1710.0	3549.0	1377.0	1813.0	2181.0	1283.0	1199.0	17153.0	8762.0	0	0	0	0	0
MA0761.2_shift3 (ETV1) 
; dyads_m37 versus MA0761.2 (ETV1); m=8/23; ncol2=14; w=10; offset=-2; strand=D; shift=3; score=0.635439; ---rraCAGGAAGTgrr---
; cor=; Ncor=
a	0	0	0	12622.0	11359.0	22801.0	1848.0	33305.0	231.0	378.0	36130.0	33368.0	4235.0	3343.0	7922.0	11678.0	9861.0	0	0	0
c	0	0	0	7468.0	8638.0	4339.0	32139.0	3064.0	275.0	271.0	471.0	486.0	1307.0	3889.0	5060.0	7475.0	9114.0	0	0	0
g	0	0	0	9643.0	10407.0	6015.0	2389.0	573.0	36483.0	36121.0	375.0	412.0	31256.0	3146.0	18967.0	10820.0	9698.0	0	0	0
t	0	0	0	7606.0	6935.0	4184.0	963.0	397.0	350.0	569.0	363.0	3073.0	541.0	26961.0	5390.0	7366.0	8666.0	0	0	0
MA0473.3_shift3 (ELF1) 
; dyads_m37 versus MA0473.3 (ELF1); m=9/23; ncol2=14; w=10; offset=-2; strand=D; shift=3; score=0.626882; ---aamCAGGAAGTGrv---
; cor=; Ncor=
a	0	0	0	18678.0	18648.0	17440.0	3094.0	42164.0	320.0	649.0	45930.0	45243.0	4063.0	3009.0	5688.0	12561.0	12020.0	0	0	0
c	0	0	0	8627.0	7834.0	12699.0	37923.0	4038.0	421.0	505.0	796.0	705.0	1570.0	1993.0	4236.0	11843.0	12681.0	0	0	0
g	0	0	0	11540.0	11305.0	10440.0	4819.0	932.0	46642.0	45970.0	676.0	779.0	41738.0	2007.0	34757.0	16920.0	13472.0	0	0	0
t	0	0	0	8925.0	9983.0	7191.0	1934.0	636.0	387.0	646.0	368.0	1043.0	399.0	40761.0	3089.0	6446.0	9597.0	0	0	0
MA0062.3_rc_shift3 (GABPA_rc) 
; dyads_m37 versus MA0062.3_rc (GABPA_rc); m=10/23; ncol2=14; w=10; offset=-2; strand=R; shift=3; score=0.625418; ---rraCAGGAAGTgrr---
; cor=; Ncor=
a	0	0	0	21388.0	20341.0	40409.0	5012.0	57654.0	859.0	1558.0	61754.0	59186.0	6717.0	4358.0	9453.0	19068.0	16725.0	0	0	0
c	0	0	0	13187.0	15081.0	7720.0	51920.0	4561.0	520.0	1150.0	1633.0	965.0	2169.0	4873.0	6989.0	13751.0	15945.0	0	0	0
g	0	0	0	17382.0	18154.0	12006.0	6328.0	1542.0	63107.0	61373.0	1230.0	1443.0	55664.0	3988.0	41398.0	21679.0	16922.0	0	0	0
t	0	0	0	13522.0	11903.0	5344.0	2219.0	1722.0	993.0	1398.0	862.0	3885.0	929.0	52260.0	7639.0	10981.0	15887.0	0	0	0
MA1508.1_shift2 (IKZF1) 
; dyads_m37 versus MA1508.1 (IKZF1); m=11/23; ncol2=12; w=9; offset=-3; strand=D; shift=2; score=0.601735; --rrAACAGGAAry------
; cor=; Ncor=
a	0	0	3295.0	4187.0	8122.0	9137.0	673.0	10194.0	125.0	418.0	10323.0	10254.0	3300.0	2221.0	0	0	0	0	0	0
c	0	0	2055.0	2292.0	1158.0	473.0	8678.0	212.0	106.0	178.0	247.0	114.0	1675.0	2991.0	0	0	0	0	0	0
g	0	0	3873.0	2868.0	1007.0	956.0	1272.0	252.0	10569.0	10185.0	297.0	261.0	4919.0	2317.0	0	0	0	0	0	0
t	0	0	1695.0	1571.0	631.0	352.0	295.0	260.0	118.0	137.0	51.0	289.0	1024.0	3389.0	0	0	0	0	0	0
MA0750.2_shift4 (ZBTB7A) 
; dyads_m37 versus MA0750.2 (ZBTB7A); m=12/23; ncol2=13; w=10; offset=-1; strand=D; shift=4; score=0.601203; ----rsCCGGAAGtgss---
; cor=; Ncor=
a	0	0	0	0	4136.0	2783.0	477.0	2490.0	173.0	114.0	13854.0	13719.0	629.0	1141.0	1744.0	2709.0	2850.0	0	0	0
c	0	0	0	0	3512.0	5356.0	12469.0	11293.0	210.0	163.0	274.0	343.0	711.0	3433.0	2485.0	4386.0	4856.0	0	0	0
g	0	0	0	0	4167.0	4397.0	1496.0	624.0	14130.0	14239.0	335.0	261.0	13112.0	1623.0	9142.0	5862.0	4669.0	0	0	0
t	0	0	0	0	2826.0	2105.0	199.0	234.0	128.0	125.0	178.0	318.0	189.0	8444.0	1270.0	1684.0	2266.0	0	0	0
MA0598.3_rc_shift2 (EHF_rc) 
; dyads_m37 versus MA0598.3_rc (EHF_rc); m=13/23; ncol2=15; w=10; offset=-3; strand=R; shift=2; score=0.595711; --raaacAGGAAGTgrs---
; cor=; Ncor=
a	0	0	4262.0	5393.0	10095.0	6725.0	2629.0	12794.0	112.0	201.0	14865.0	14622.0	1706.0	723.0	2827.0	4683.0	3665.0	0	0	0
c	0	0	3194.0	3088.0	1264.0	3299.0	9061.0	1538.0	101.0	139.0	199.0	152.0	377.0	775.0	1540.0	3355.0	4102.0	0	0	0
g	0	0	4829.0	3671.0	1762.0	3029.0	2983.0	608.0	14997.0	14833.0	164.0	167.0	13116.0	456.0	8887.0	4628.0	4341.0	0	0	0
t	0	0	3083.0	3216.0	2247.0	2315.0	695.0	428.0	158.0	195.0	140.0	427.0	169.0	13414.0	2114.0	2702.0	3260.0	0	0	0
MA0687.1_shift1 (SPIC) 
; dyads_m37 versus MA0687.1 (SPIC); m=14/23; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.573594; -aaAAWsmGGAAGTa-----
; cor=; Ncor=
a	0	144.0	162.0	186.0	194.0	171.0	30.0	88.0	0.0	13.0	204.0	192.0	13.0	45.0	115.0	0	0	0	0	0
c	0	83.0	31.0	25.0	9.0	0.0	75.0	59.0	8.0	0.0	7.0	31.0	0.0	24.0	36.0	0	0	0	0	0
g	0	68.0	70.0	13.0	0.0	0.0	181.0	48.0	217.0	232.0	0.0	13.0	231.0	17.0	9.0	0	0	0	0	0
t	0	72.0	40.0	18.0	4.0	75.0	13.0	0.0	3.0	26.0	16.0	8.0	0.0	194.0	19.0	0	0	0	0	0
MA0518.1_shift2 (Stat4) 
; dyads_m37 versus MA0518.1 (Stat4); m=15/23; ncol2=14; w=10; offset=-3; strand=D; shift=2; score=0.539182; --yTTCyrRGAArysr----
; cor=; Ncor=
a	0	0	211.0	12.0	26.0	632.0	307.0	1450.0	733.0	45.0	2873.0	2873.0	1573.0	486.0	632.0	889.0	0	0	0	0
c	0	0	1019.0	2.0	0.0	2229.0	1491.0	28.0	0.0	0.0	0.0	0.0	279.0	785.0	721.0	443.0	0	0	0	0
g	0	0	484.0	0.0	529.0	12.0	72.0	1223.0	2134.0	2828.0	0.0	0.0	833.0	685.0	1028.0	1117.0	0	0	0	0
t	0	0	1159.0	2859.0	2318.0	0.0	1003.0	172.0	6.0	0.0	0.0	0.0	188.0	917.0	492.0	424.0	0	0	0	0
MA0520.1_rc_shift0 (Stat6_rc) 
; dyads_m37 versus MA0520.1_rc (Stat6_rc); m=16/23; ncol2=15; w=10; offset=-5; strand=R; shift=0; score=0.524581; rkTTCtswrGAArws-----
; cor=; Ncor=
a	782.0	293.0	0.0	0.0	30.0	280.0	92.0	948.0	578.0	50.0	1839.0	1852.0	698.0	487.0	450.0	0	0	0	0	0
c	235.0	398.0	3.0	0.0	1796.0	416.0	898.0	219.0	0.0	0.0	0.0	0.0	436.0	372.0	482.0	0	0	0	0	0
g	490.0	540.0	0.0	0.0	0.0	3.0	534.0	21.0	1204.0	1680.0	0.0	0.0	566.0	328.0	663.0	0	0	0	0	0
t	345.0	621.0	1849.0	1852.0	26.0	1153.0	328.0	664.0	70.0	122.0	13.0	0.0	152.0	665.0	257.0	0	0	0	0	0
MA1652.1_shift5 (ZKSCAN5) 
; dyads_m37 versus MA1652.1 (ZKSCAN5); m=17/23; ncol2=14; w=10; offset=0; strand=D; shift=5; score=0.514333; -----rgaGGArGTGAgrr-
; cor=; Ncor=
a	0	0	0	0	0	870.0	822.0	1510.0	136.0	38.0	3199.0	1446.0	92.0	73.0	43.0	3199.0	375.0	1268.0	1169.0	0
c	0	0	0	0	0	636.0	704.0	315.0	30.0	27.0	62.0	27.0	37.0	86.0	24.0	41.0	370.0	504.0	569.0	0
g	0	0	0	0	0	1161.0	1197.0	801.0	3111.0	3236.0	47.0	1827.0	3149.0	76.0	3251.0	62.0	2034.0	1078.0	1052.0	0
t	0	0	0	0	0	660.0	604.0	701.0	50.0	26.0	19.0	27.0	49.0	3092.0	9.0	25.0	548.0	477.0	537.0	0
MA0081.2_rc_shift2 (SPIB_rc) 
; dyads_m37 versus MA0081.2_rc (SPIB_rc); m=18/23; ncol2=16; w=10; offset=-3; strand=R; shift=2; score=0.504822; --raaaGAGGAAGTGara--
; cor=; Ncor=
a	0	0	10150.0	14333.0	16580.0	17264.0	3481.0	19719.0	1034.0	426.0	26297.0	26087.0	1445.0	1323.0	859.0	15129.0	9411.0	11760.0	0	0
c	0	0	4165.0	2409.0	2087.0	781.0	2316.0	1829.0	129.0	153.0	243.0	157.0	2516.0	669.0	1721.0	3193.0	4544.0	4026.0	0	0
g	0	0	8589.0	6029.0	5425.0	3922.0	20113.0	4517.0	25492.0	26145.0	200.0	236.0	22730.0	619.0	23971.0	6429.0	8293.0	5797.0	0	0
t	0	0	4026.0	4159.0	2838.0	4963.0	1020.0	865.0	275.0	206.0	190.0	450.0	239.0	24319.0	379.0	2179.0	4682.0	5347.0	0	0
MA0137.3_shift2 (STAT1) 
; dyads_m37 versus MA0137.3 (STAT1); m=19/23; ncol2=11; w=8; offset=-3; strand=D; shift=2; score=0.447787; --tTTCyrGGAAa-------
; cor=; Ncor=
a	0	0	366.0	0.0	0.0	361.0	109.0	1739.0	163.0	29.0	3620.0	3624.0	1879.0	0	0	0	0	0	0	0
c	0	0	731.0	52.0	6.0	3262.0	2009.0	0.0	0.0	7.0	0.0	5.0	311.0	0	0	0	0	0	0	0
g	0	0	785.0	0.0	110.0	6.0	0.0	1637.0	3466.0	3426.0	9.0	0.0	725.0	0	0	0	0	0	0	0
t	0	0	1747.0	3577.0	3513.0	0.0	1511.0	253.0	0.0	167.0	0.0	0.0	714.0	0	0	0	0	0	0	0
MA0149.1_shift4 (EWSR1-FLI1) 
; dyads_m37 versus MA0149.1 (EWSR1-FLI1); m=20/23; ncol2=18; w=10; offset=-1; strand=D; shift=4; score=0.441088; ----GGAAGGAAGGAAGGAA
; cor=; Ncor=
a	0	0	0	0	0.0	2.0	104.0	104.0	1.0	2.0	103.0	102.0	0.0	0.0	99.0	105.0	0.0	0.0	100.0	102.0
c	0	0	0	0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	2.0	4.0	0.0	0.0	2.0	3.0	0.0
g	0	0	0	0	105.0	103.0	1.0	1.0	104.0	102.0	2.0	3.0	104.0	103.0	2.0	0.0	105.0	103.0	0.0	2.0
t	0	0	0	0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	2.0	1.0
MA0080.5_shift0 (SPI1) 
; dyads_m37 versus MA0080.5 (SPI1); m=21/23; ncol2=20; w=10; offset=-5; strand=D; shift=0; score=0.415197; rrraaAGAGGAAGTGAaarw
; cor=; Ncor=
a	42201.0	48240.0	54154.0	78831.0	81904.0	99739.0	15301.0	113087.0	5230.0	3323.0	129177.0	127888.0	11279.0	13931.0	11028.0	90925.0	60831.0	59460.0	39411.0	42838.0
c	22587.0	21262.0	20183.0	11424.0	12269.0	2914.0	10958.0	3425.0	568.0	954.0	1339.0	792.0	9931.0	3717.0	12697.0	11316.0	20113.0	16927.0	26246.0	24884.0
g	38405.0	34277.0	37341.0	25893.0	25580.0	13479.0	100825.0	12544.0	125703.0	127639.0	1407.0	1308.0	109802.0	7231.0	103485.0	20647.0	30577.0	29188.0	34829.0	28335.0
t	30010.0	29424.0	21525.0	17055.0	13450.0	17071.0	6119.0	4147.0	1702.0	1287.0	1280.0	3215.0	2191.0	108324.0	5993.0	10315.0	21682.0	27628.0	32717.0	37146.0
MA0101.1_rc_shift8 (REL_rc) 
; dyads_m37 versus MA0101.1_rc (REL_rc); m=22/23; ncol2=10; w=7; offset=3; strand=R; shift=8; score=0.409942; --------GGAAwkyCCs--
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0.0	2.0	15.0	16.0	10.0	3.0	2.0	1.0	1.0	4.0	0	0
c	0	0	0	0	0	0	0	0	0.0	0.0	0.0	0.0	1.0	3.0	9.0	15.0	15.0	8.0	0	0
g	0	0	0	0	0	0	0	0	16.0	15.0	0.0	0.0	1.0	5.0	1.0	0.0	1.0	5.0	0	0
t	0	0	0	0	0	0	0	0	1.0	0.0	2.0	1.0	5.0	6.0	5.0	1.0	0.0	0.0	0	0
MA0528.2_shift1 (ZNF263) 
; dyads_m37 versus MA0528.2 (ZNF263); m=23/23; ncol2=12; w=8; offset=-4; strand=D; shift=1; score=0.407843; -gsgGGGAGGAsg-------
; cor=; Ncor=
a	0	13287.0	11016.0	13001.0	1610.0	789.0	950.0	53900.0	830.0	695.0	52499.0	9539.0	8436.0	0	0	0	0	0	0	0
c	0	13040.0	14909.0	6183.0	1659.0	1544.0	972.0	1660.0	966.0	2190.0	1758.0	15413.0	11689.0	0	0	0	0	0	0	0
g	0	20283.0	17883.0	28912.0	51804.0	52818.0	53435.0	163.0	52875.0	52741.0	1448.0	24825.0	25115.0	0	0	0	0	0	0	0
t	0	9733.0	12535.0	8247.0	1270.0	1192.0	986.0	620.0	1672.0	717.0	638.0	6566.0	11103.0	0	0	0	0	0	0	0