One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m38/peak-motifs_dyads_m38.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m38/peak-motifs_dyads_m38_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m38_shift1 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m38_shift1 (dyads_m38dyads_m38) |
 |
|
|
; dyads_m38 (dyads_m38dyads_m38); m=0 (reference); ncol1=18; shift=1; ncol=19; -ssCGCssssssssGCGss
; Alignment reference
a 0 1080 1035 28 44 88 1217 922 1108 1015 1093 1004 1013 1193 123 24 38 940 1202
c 0 3320 2653 8107 71 7867 2552 3146 2892 3455 2763 3328 3246 3363 250 8188 152 3699 2721
g 0 2721 3695 152 8184 250 3361 3246 3319 2763 3452 2892 3142 2552 7862 71 8105 2653 3320
t 0 1202 940 36 24 118 1193 1009 1004 1090 1015 1099 922 1215 88 40 28 1031 1080
|
| MA0506.1_shift8 (NRF1) |
 |
|
|
; dyads_m38 versus MA0506.1 (NRF1); m=1/2; ncol2=11; w=11; offset=7; strand=D; shift=8; score=0.447527; --------GCGCmTGCGCr
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 602.0 623.0 196.0 0.0 1514.0 0.0 0.0 0.0 0.0 74.0 2245.0
c 0 0 0 0 0 0 0 0 375.0 4001.0 189.0 4016.0 1862.0 403.0 0.0 4338.0 349.0 4550.0 804.0
g 0 0 0 0 0 0 0 0 3647.0 0.0 4239.0 468.0 935.0 528.0 4624.0 0.0 4275.0 0.0 1575.0
t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 140.0 313.0 3693.0 0.0 286.0 0.0 0.0 0.0
|
| MA1650.1_shift0 (ZBTB14) |
 |
|
|
; dyads_m38 versus MA1650.1 (ZBTB14); m=2/2; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.408435; ssCCGCGCACss-------
; cor=; Ncor=
a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 0 0 0 0 0
c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 0 0 0 0 0
g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 0 0 0 0 0
t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0 0 0 0 0 0
|