One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m4_shift0 (dyads_m4dyads_m4) |
 |
|
|
; dyads_m4 (dyads_m4dyads_m4); m=0 (reference); ncol1=23; shift=0; ncol=23; ssCCGCGCGCGCGCGCCGCGGss
; Alignment reference
a 14 15 2 4 3 6 3 5 9 0 2 3 6 2 3 2 2 5 4 2 2 12 17
c 42 30 79 80 8 86 6 92 4 87 11 93 8 90 11 83 83 10 90 12 13 52 31
g 38 38 16 12 90 9 89 4 88 5 86 5 85 7 87 14 11 84 6 85 82 27 36
t 8 19 5 6 1 1 4 1 1 10 3 1 3 3 1 3 6 3 2 3 5 11 18
|
| MA1650.1_shift0 (ZBTB14) |
 |
|
|
; dyads_m4 versus MA1650.1 (ZBTB14); m=1/1; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.400363; ssCCGCGCACss-----------
; cor=; Ncor=
a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 0 0 0 0 0 0 0 0 0
c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 0 0 0 0 0 0 0 0 0
g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 0 0 0 0 0 0 0 0 0
t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0 0 0 0 0 0 0 0 0 0
|