One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m41/peak-motifs_dyads_m41.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m41/peak-motifs_dyads_m41_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m41_shift1 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m41_shift1 (dyads_m41dyads_m41) |
 |
|
|
; dyads_m41 (dyads_m41dyads_m41); m=0 (reference); ncol1=15; shift=1; ncol=16; -ssCCGsssssCCGss
; Alignment reference
a 0 756 590 22 0 0 705 840 736 765 519 18 0 0 663 835
c 0 2206 1964 5439 5526 5 2672 1941 2059 2174 2063 5427 5530 5 2633 1964
g 0 1725 2033 72 20 5541 1550 2112 1869 1694 1994 78 16 5541 1676 2033
t 0 859 959 13 0 0 619 653 882 913 970 23 0 0 574 714
|
| MA1513.1_shift0 (KLF15) |
 |
|
|
; dyads_m41 versus MA1513.1 (KLF15); m=1/1; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.490412; scCCCGCCCcs-----
; cor=; Ncor=
a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0
c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0
g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0
t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0
|