Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m48/peak-motifs_dyads_m48.tf
		file1	1	11	8123
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m48 MA0476.1 dyads_m48dyads_m48 FOS 0.950 0.950 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m48 MA1634.1 dyads_m48dyads_m48 BATF 0.936 0.936 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m48 MA0462.2 dyads_m48dyads_m48 BATF::JUN 0.933 0.933 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m48 MA0835.2 dyads_m48dyads_m48 BATF3 0.914 0.914 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m48 MA1134.1 dyads_m48dyads_m48 FOS::JUNB 0.939 0.861 11 12 11 12 0.9167 1.0000 0.9167 R -1
dyads_m48 MA0841.1 dyads_m48dyads_m48 NFE2 0.858 0.858 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m48 MA1130.1 dyads_m48dyads_m48 FOSL2::JUN 0.935 0.857 11 12 11 12 0.9167 1.0000 0.9167 R 0
dyads_m48 MA1135.1 dyads_m48dyads_m48 FOSB::JUNB 0.942 0.856 11 10 10 11 0.9091 0.9091 1.0000 R 1
dyads_m48 MA1138.1 dyads_m48dyads_m48 FOSL2::JUNB 0.941 0.855 11 10 10 11 0.9091 0.9091 1.0000 R 1
dyads_m48 MA1144.1 dyads_m48dyads_m48 FOSL2::JUND 0.940 0.855 11 10 10 11 0.9091 0.9091 1.0000 D 0
dyads_m48 MA0099.3 dyads_m48dyads_m48 FOS::JUN 0.931 0.846 11 10 10 11 0.9091 0.9091 1.0000 R 0
dyads_m48 MA1142.1 dyads_m48dyads_m48 FOSL1::JUND 0.913 0.830 11 10 10 11 0.9091 0.9091 1.0000 D 0
dyads_m48 MA0478.1 dyads_m48dyads_m48 FOSL2 0.960 0.800 11 11 10 12 0.8333 0.9091 0.9091 D -1
dyads_m48 MA1132.1 dyads_m48dyads_m48 JUN::JUNB 0.870 0.791 11 10 10 11 0.9091 0.9091 1.0000 D 0
dyads_m48 MA0477.2 dyads_m48dyads_m48 FOSL1 0.927 0.785 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m48 MA1137.1 dyads_m48dyads_m48 FOSL1::JUNB 0.923 0.781 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m48 MA1141.1 dyads_m48dyads_m48 FOS::JUND 0.914 0.773 11 13 11 13 0.8462 1.0000 0.8462 R -1
dyads_m48 MA1128.1 dyads_m48dyads_m48 FOSL1::JUN 0.912 0.772 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m48 MA0491.2 dyads_m48dyads_m48 JUND 0.909 0.769 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m48 MA0490.2 dyads_m48dyads_m48 JUNB 0.901 0.762 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m48 MA1633.1 dyads_m48dyads_m48 BACH1 0.897 0.759 11 13 11 13 0.8462 1.0000 0.8462 D 0
dyads_m48 MA1622.1 dyads_m48dyads_m48 Smad2::Smad3 0.956 0.751 11 14 11 14 0.7857 1.0000 0.7857 D -2
dyads_m48 MA0655.1 dyads_m48dyads_m48 JDP2 0.884 0.724 11 9 9 11 0.8182 0.8182 1.0000 D 1
dyads_m48 MA0496.3 dyads_m48dyads_m48 MAFK 0.892 0.654 11 15 11 15 0.7333 1.0000 0.7333 D -1
dyads_m48 MA0489.1 dyads_m48dyads_m48 JUN(var.2) 0.962 0.641 11 14 10 15 0.6667 0.9091 0.7143 R 1
dyads_m48 MA0591.1 dyads_m48dyads_m48 Bach1::Mafk 0.852 0.625 11 15 11 15 0.7333 1.0000 0.7333 D -2
dyads_m48 MA0150.2 dyads_m48dyads_m48 Nfe2l2 0.827 0.606 11 15 11 15 0.7333 1.0000 0.7333 D -3
dyads_m48 MA0089.2 dyads_m48dyads_m48 NFE2L1 0.845 0.581 11 16 11 16 0.6875 1.0000 0.6875 D -2
dyads_m48 MA1521.1 dyads_m48dyads_m48 MAFA 0.751 0.551 11 15 11 15 0.7333 1.0000 0.7333 D -2
dyads_m48 MA1520.1 dyads_m48dyads_m48 MAF 0.746 0.547 11 15 11 15 0.7333 1.0000 0.7333 R -2
dyads_m48 MA0501.1 dyads_m48dyads_m48 MAF::NFE2 0.847 0.530 11 15 10 16 0.6250 0.9091 0.6667 D 1
dyads_m48 MA1101.2 dyads_m48dyads_m48 BACH2 0.869 0.503 11 19 11 19 0.5789 1.0000 0.5789 D -4
dyads_m48 MA0067.1 dyads_m48dyads_m48 Pax2 0.746 0.435 11 8 7 12 0.5833 0.6364 0.8750 R -1 
 Host name	pedagogix
 Job started	2020-04-14.172011
 Job done	2020-04-14.172058
 Seconds	7.38
	user	7.38
	system	0.93
	cuser	36.87
;	csystem	2.06