One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m50/peak-motifs_dyads_m50.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m50/peak-motifs_dyads_m50_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m50_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m50_shift1 (dyads_m50dyads_m50)
; dyads_m50 (dyads_m50dyads_m50); m=0 (reference); ncol1=14; shift=1; ncol=17; -csCCCcsccCCCms-- ; Alignment reference a 0 2745 2642 0 0 0 3401 2846 3009 2164 0 0 0 4573 2759 0 0 c 0 7080 6132 17351 17343 17351 7675 7287 8128 8031 17351 17345 17350 6025 7019 0 0 g 0 3769 4670 0 8 0 2625 4391 3431 3908 0 6 1 3012 4960 0 0 t 0 3757 3907 0 0 0 3650 2827 2783 3248 0 0 0 3741 2613 0 0

MA1653.1_shift1 (ZNF148)
; dyads_m50 versus MA1653.1 (ZNF148); m=1/10; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.677577; -ysCCCCTCCCcc---- ; cor=; Ncor= a 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 c 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 g 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 t 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0

MA0753.2_shift2 (ZNF740)
; dyads_m50 versus MA0753.2 (ZNF740); m=2/10; ncol2=13; w=13; offset=1; strand=D; shift=2; score=0.65693; --cyrCCCCCCCCAc-- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0

MA1522.1_shift1 (MAZ)
; dyads_m50 versus MA1522.1 (MAZ); m=3/10; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.564903; -ssCCCCTCCcc----- ; cor=; Ncor= a 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 0 c 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 0 g 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 0 t 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0 0

MA1513.1_shift2 (KLF15)
; dyads_m50 versus MA1513.1 (KLF15); m=4/10; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.561522; --scCCCGCCCcs---- ; cor=; Ncor= a 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 c 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 g 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 t 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0

MA0599.1_shift4 (KLF5)
; dyads_m50 versus MA0599.1 (KLF5); m=5/10; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.527908; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA1630.1_rc_shift5 (Znf281_rc)
; dyads_m50 versus MA1630.1_rc (Znf281_rc); m=6/10; ncol2=11; w=10; offset=4; strand=R; shift=5; score=0.503602; -----CcTCCCCCAcc- ; cor=; Ncor= a 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 c 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 g 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 t 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0

MA1578.1_shift0 (VEZF1)
; dyads_m50 versus MA1578.1 (VEZF1); m=7/10; ncol2=10; w=9; offset=-1; strand=D; shift=0; score=0.475477; CCCCCCmytw------- ; cor=; Ncor= a 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 0 0 0 0 0 0 c 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 0 0 0 0 0 0 g 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 0 0 0 0 0 0 t 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0 0 0 0 0 0 0

MA0057.1_rc_shift0 (MZF1(var.2)_rc)
; dyads_m50 versus MA0057.1_rc (MZF1(var.2)_rc); m=8/10; ncol2=10; w=9; offset=-1; strand=R; shift=0; score=0.44458; yymCCCMTmv------- ; cor=; Ncor= a 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 0 0 0 0 c 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 0 0 0 0 g 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 0 0 0 0 t 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0 0 0 0 0

MA0155.1_rc_shift6 (INSM1_rc)
; dyads_m50 versus MA0155.1_rc (INSM1_rc); m=9/10; ncol2=12; w=9; offset=5; strand=R; shift=6; score=0.418161; ------ygmCCCCwkrC ; cor=; Ncor= a 0 0 0 0 0 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 4.0 c 0 0 0 0 0 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 20.0 g 0 0 0 0 0 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 0.0 t 0 0 0 0 0 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0 0.0

MA0597.1_shift7 (THAP1)
; dyads_m50 versus MA0597.1 (THAP1); m=10/10; ncol2=9; w=8; offset=6; strand=D; shift=7; score=0.407874; -------ytGCCMkya- ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m50_shift1 (dyads_m50dyads_m50)				; dyads_m50 (dyads_m50dyads_m50); m=0 (reference); ncol1=14; shift=1; ncol=17; -csCCCcsccCCCms-- ; Alignment reference a 0 2745 2642 0 0 0 3401 2846 3009 2164 0 0 0 4573 2759 0 0 c 0 7080 6132 17351 17343 17351 7675 7287 8128 8031 17351 17345 17350 6025 7019 0 0 g 0 3769 4670 0 8 0 2625 4391 3431 3908 0 6 1 3012 4960 0 0 t 0 3757 3907 0 0 0 3650 2827 2783 3248 0 0 0 3741 2613 0 0
MA1653.1_shift1 (ZNF148)				; dyads_m50 versus MA1653.1 (ZNF148); m=1/10; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.677577; -ysCCCCTCCCcc---- ; cor=; Ncor= a 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 c 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 g 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 t 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0
MA0753.2_shift2 (ZNF740)				; dyads_m50 versus MA0753.2 (ZNF740); m=2/10; ncol2=13; w=13; offset=1; strand=D; shift=2; score=0.65693; --cyrCCCCCCCCAc-- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0
MA1522.1_shift1 (MAZ)				; dyads_m50 versus MA1522.1 (MAZ); m=3/10; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.564903; -ssCCCCTCCcc----- ; cor=; Ncor= a 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 0 c 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 0 g 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 0 t 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0 0
MA1513.1_shift2 (KLF15)				; dyads_m50 versus MA1513.1 (KLF15); m=4/10; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.561522; --scCCCGCCCcs---- ; cor=; Ncor= a 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 c 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 g 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 t 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0
MA0599.1_shift4 (KLF5)				; dyads_m50 versus MA0599.1 (KLF5); m=5/10; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.527908; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA1630.1_rc_shift5 (Znf281_rc)				; dyads_m50 versus MA1630.1_rc (Znf281_rc); m=6/10; ncol2=11; w=10; offset=4; strand=R; shift=5; score=0.503602; -----CcTCCCCCAcc- ; cor=; Ncor= a 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 c 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 g 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 t 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0
MA1578.1_shift0 (VEZF1)				; dyads_m50 versus MA1578.1 (VEZF1); m=7/10; ncol2=10; w=9; offset=-1; strand=D; shift=0; score=0.475477; CCCCCCmytw------- ; cor=; Ncor= a 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 0 0 0 0 0 0 c 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 0 0 0 0 0 0 g 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 0 0 0 0 0 0 t 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0 0 0 0 0 0 0
MA0057.1_rc_shift0 (MZF1(var.2)_rc)				; dyads_m50 versus MA0057.1_rc (MZF1(var.2)_rc); m=8/10; ncol2=10; w=9; offset=-1; strand=R; shift=0; score=0.44458; yymCCCMTmv------- ; cor=; Ncor= a 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 0 0 0 0 c 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 0 0 0 0 g 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 0 0 0 0 t 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0 0 0 0 0
MA0155.1_rc_shift6 (INSM1_rc)				; dyads_m50 versus MA0155.1_rc (INSM1_rc); m=9/10; ncol2=12; w=9; offset=5; strand=R; shift=6; score=0.418161; ------ygmCCCCwkrC ; cor=; Ncor= a 0 0 0 0 0 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 4.0 c 0 0 0 0 0 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 20.0 g 0 0 0 0 0 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 0.0 t 0 0 0 0 0 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0 0.0
MA0597.1_shift7 (THAP1)				; dyads_m50 versus MA0597.1 (THAP1); m=10/10; ncol2=9; w=8; offset=6; strand=D; shift=7; score=0.407874; -------ytGCCMkya- ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0