One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m8_shift6 ; 18 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m8_shift6 (dyads_m8dyads_m8)     
; dyads_m8 (dyads_m8dyads_m8); m=0 (reference); ncol1=10; shift=6; ncol=16; ------ssCTCAGChs
; Alignment reference
a	0	0	0	0	0	0	2581	2204	0	0	0	12691	0	0	3174	1973
c	0	0	0	0	0	0	3231	4052	12691	0	12691	0	0	12691	3674	3185
g	0	0	0	0	0	0	4089	3899	0	0	0	0	12691	0	1091	5097
t	0	0	0	0	0	0	2790	2536	0	12691	0	0	0	0	4752	2436
MA1633.1_shift3 (BACH1) 
; dyads_m8 versus MA1633.1 (BACH1); m=1/17; ncol2=13; w=10; offset=-3; strand=D; shift=3; score=0.626818; ---saTGACTCAGCaw
; cor=; Ncor=
a	0	0	0	3257.0	6929.0	105.0	97.0	15046.0	443.0	650.0	576.0	14778.0	339.0	769.0	8799.0	4492.0
c	0	0	0	3946.0	3833.0	267.0	149.0	230.0	12597.0	220.0	14563.0	194.0	623.0	13382.0	2167.0	3574.0
g	0	0	0	4835.0	3848.0	149.0	14831.0	167.0	2083.0	266.0	178.0	310.0	13050.0	858.0	1971.0	3553.0
t	0	0	0	3519.0	947.0	15036.0	480.0	114.0	434.0	14421.0	240.0	275.0	1545.0	548.0	2620.0	3938.0
MA0496.3_shift2 (MAFK) 
; dyads_m8 versus MA0496.3 (MAFK); m=2/17; ncol2=15; w=10; offset=-4; strand=D; shift=2; score=0.551362; --tgmTGACTCAGCmw
; cor=; Ncor=
a	0	0	11946.0	9602.0	14089.0	1616.0	1108.0	47484.0	2492.0	2722.0	1818.0	47675.0	1439.0	2664.0	24802.0	15933.0
c	0	0	10789.0	10655.0	27000.0	1568.0	1366.0	1670.0	39125.0	1133.0	47872.0	882.0	1921.0	43458.0	14138.0	10737.0
g	0	0	9969.0	21904.0	6706.0	1058.0	46695.0	1306.0	7573.0	1081.0	957.0	1267.0	44013.0	3327.0	4590.0	10512.0
t	0	0	19030.0	9573.0	3939.0	47492.0	2565.0	1274.0	2544.0	46798.0	1087.0	1910.0	4361.0	2285.0	8204.0	14552.0
MA1629.1_shift6 (Zic2) 
; dyads_m8 versus MA1629.1 (Zic2); m=3/17; ncol2=14; w=10; offset=0; strand=D; shift=6; score=0.548248; ------mkCaCAGCAG
; cor=; Ncor=
a	0	0	0	0	0	0	3145.0	2450.0	1161.0	6888.0	135.0	11074.0	140.0	80.0	10625.0	192.0
c	0	0	0	0	0	0	3507.0	1755.0	9933.0	1765.0	11476.0	391.0	228.0	11272.0	118.0	133.0
g	0	0	0	0	0	0	2761.0	3821.0	585.0	829.0	188.0	186.0	11484.0	269.0	735.0	11184.0
t	0	0	0	0	0	0	2506.0	3893.0	240.0	2437.0	120.0	268.0	67.0	298.0	441.0	410.0
MA0117.2_rc_shift7 (Mafb_rc) 
; dyads_m8 versus MA0117.2_rc (Mafb_rc); m=4/17; ncol2=12; w=9; offset=1; strand=R; shift=7; score=0.544764; -------hGTCAGCAw
; cor=; Ncor=
a	0	0	0	0	0	0	0	816.0	273.0	13.0	170.0	2182.0	7.0	5.0	2182.0	611.0
c	0	0	0	0	0	0	0	646.0	490.0	17.0	2182.0	2.0	5.0	2182.0	31.0	429.0
g	0	0	0	0	0	0	0	138.0	2182.0	13.0	13.0	36.0	2182.0	14.0	618.0	398.0
t	0	0	0	0	0	0	0	582.0	182.0	2182.0	45.0	31.0	295.0	2.0	264.0	744.0
MA0591.1_shift1 (Bach1::Mafk) 
; dyads_m8 versus MA0591.1 (Bach1::Mafk); m=5/17; ncol2=15; w=10; offset=-5; strand=D; shift=1; score=0.538911; -rssrTGACTCAGCAs
; cor=; Ncor=
a	0	45.0	14.0	15.0	66.0	2.0	0.0	113.0	0.0	1.0	5.0	108.0	0.0	0.0	98.0	12.0
c	0	14.0	36.0	41.0	16.0	1.0	0.0	0.0	94.0	0.0	107.0	1.0	1.0	114.0	4.0	42.0
g	0	41.0	46.0	54.0	32.0	0.0	107.0	0.0	20.0	4.0	2.0	3.0	113.0	0.0	6.0	38.0
t	0	14.0	18.0	4.0	0.0	111.0	7.0	1.0	0.0	109.0	0.0	2.0	0.0	0.0	6.0	22.0
MA0483.1_shift4 (Gfi1b) 
; dyads_m8 versus MA0483.1 (Gfi1b); m=6/17; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.525315; ----aAATCwCwGCw-
; cor=; Ncor=
a	0	0	0	0	1124.0	1761.0	1759.0	0.0	0.0	1033.0	61.0	1116.0	57.0	142.0	740.0	0
c	0	0	0	0	438.0	0.0	0.0	338.0	1761.0	21.0	1312.0	0.0	1.0	1328.0	433.0	0
g	0	0	0	0	104.0	0.0	2.0	28.0	0.0	0.0	388.0	1.0	1676.0	76.0	130.0	0
t	0	0	0	0	95.0	0.0	0.0	1395.0	0.0	707.0	0.0	644.0	27.0	215.0	458.0	0
MA0501.1_shift4 (MAF::NFE2) 
; dyads_m8 versus MA0501.1 (MAF::NFE2); m=7/17; ncol2=15; w=10; offset=-2; strand=D; shift=4; score=0.517482; ----rTGACTCAGCAr
; cor=; Ncor=
a	0	0	0	0	726.0	0.0	0.0	1090.0	16.0	110.0	80.0	978.0	8.0	0.0	931.0	383.0
c	0	0	0	0	26.0	0.0	0.0	0.0	871.0	1.0	937.0	0.0	4.0	1063.0	17.0	203.0
g	0	0	0	0	334.0	0.0	1082.0	0.0	166.0	12.0	22.0	51.0	1041.0	22.0	73.0	283.0
t	0	0	0	0	4.0	1090.0	8.0	0.0	37.0	967.0	51.0	61.0	37.0	5.0	69.0	221.0
MA1521.1_shift1 (MAFA) 
; dyads_m8 versus MA1521.1 (MAFA); m=8/17; ncol2=15; w=10; offset=-5; strand=D; shift=1; score=0.509505; -dTGCTGAsTCAGCah
; cor=; Ncor=
a	0	2273.0	673.0	304.0	970.0	973.0	668.0	7498.0	602.0	1281.0	1204.0	8128.0	473.0	26.0	6132.0	2465.0
c	0	1563.0	1857.0	206.0	7939.0	986.0	475.0	1615.0	3985.0	240.0	7985.0	453.0	104.0	8371.0	223.0	2126.0
g	0	2152.0	316.0	8343.0	185.0	451.0	8028.0	317.0	4024.0	1781.0	422.0	889.0	7957.0	221.0	1956.0	1532.0
t	0	2475.0	6277.0	119.0	540.0	8138.0	1291.0	1231.0	657.0	7524.0	715.0	1123.0	973.0	258.0	802.0	2340.0
MA1520.1_rc_shift1 (MAF_rc) 
; dyads_m8 versus MA1520.1_rc (MAF_rc); m=9/17; ncol2=15; w=10; offset=-5; strand=R; shift=1; score=0.501917; -wTGCTGAsTCAGCAw
; cor=; Ncor=
a	0	955.0	210.0	66.0	329.0	359.0	301.0	2715.0	344.0	432.0	682.0	2859.0	219.0	8.0	2397.0	922.0
c	0	486.0	562.0	56.0	2821.0	314.0	156.0	404.0	1431.0	116.0	2739.0	116.0	53.0	2938.0	51.0	587.0
g	0	575.0	72.0	2964.0	51.0	103.0	2776.0	89.0	1277.0	343.0	185.0	243.0	2837.0	45.0	516.0	516.0
t	0	977.0	2353.0	48.0	216.0	2904.0	609.0	529.0	387.0	2712.0	316.0	439.0	364.0	80.0	213.0	968.0
MA0659.2_shift6 (MAFG) 
; dyads_m8 versus MA0659.2 (MAFG); m=10/17; ncol2=15; w=10; offset=0; strand=D; shift=6; score=0.498791; ------ragTCAGCAt
; cor=; Ncor=
a	0	0	0	0	0	0	5651.0	12161.0	2200.0	273.0	696.0	20838.0	264.0	212.0	19623.0	4913.0
c	0	0	0	0	0	0	2485.0	2067.0	3628.0	166.0	20232.0	71.0	270.0	20693.0	302.0	2566.0
g	0	0	0	0	0	0	8586.0	2182.0	14148.0	198.0	130.0	174.0	19577.0	200.0	639.0	2848.0
t	0	0	0	0	0	0	4679.0	4991.0	1425.0	20764.0	343.0	318.0	1290.0	296.0	837.0	11074.0
MA0089.2_shift1 (NFE2L1) 
; dyads_m8 versus MA0089.2 (NFE2L1); m=11/17; ncol2=16; w=10; offset=-5; strand=D; shift=1; score=0.491818; -avmATGACTCAGCAa
; cor=; Ncor=
a	0	1244.0	878.0	992.0	2582.0	12.0	17.0	3336.0	51.0	218.0	185.0	3171.0	57.0	16.0	2857.0	1362.0
c	0	703.0	946.0	853.0	57.0	5.0	7.0	4.0	2864.0	12.0	3049.0	9.0	18.0	3281.0	64.0	517.0
g	0	671.0	1050.0	742.0	706.0	2.0	3308.0	10.0	358.0	35.0	25.0	78.0	3018.0	33.0	142.0	694.0
t	0	738.0	482.0	769.0	11.0	3337.0	24.0	6.0	83.0	3091.0	97.0	98.0	263.0	26.0	293.0	783.0
MA1596.1_shift6 (ZNF460) 
; dyads_m8 versus MA1596.1 (ZNF460); m=12/17; ncol2=16; w=10; offset=0; strand=D; shift=6; score=0.470245; ------rCCTCmGCCT
; cor=; Ncor=
a	0	0	0	0	0	0	412.0	49.0	19.0	27.0	17.0	851.0	61.0	6.0	1.0	13.0
c	0	0	0	0	0	0	131.0	1264.0	1460.0	218.0	1519.0	495.0	23.0	1588.0	1596.0	12.0
g	0	0	0	0	0	0	1023.0	185.0	67.0	83.0	47.0	181.0	1493.0	7.0	9.0	17.0
t	0	0	0	0	0	0	46.0	114.0	66.0	1284.0	29.0	85.0	35.0	11.0	6.0	1570.0
MA0048.2_shift8 (NHLH1) 
; dyads_m8 versus MA0048.2 (NHLH1); m=13/17; ncol2=10; w=8; offset=2; strand=D; shift=8; score=0.46941; --------cGCAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	788.0	461.0	3.0	2166.0	0.0	96.0	0.0	2.0
c	0	0	0	0	0	0	0	0	2166.0	179.0	2166.0	3.0	301.0	2166.0	4.0	4.0
g	0	0	0	0	0	0	0	0	181.0	2166.0	0.0	1.0	2166.0	124.0	4.0	2166.0
t	0	0	0	0	0	0	0	0	111.0	142.0	0.0	0.0	114.0	0.0	2166.0	1.0
MA0842.2_rc_shift7 (NRL_rc) 
; dyads_m8 versus MA0842.2_rc (NRL_rc); m=14/17; ncol2=13; w=9; offset=1; strand=R; shift=7; score=0.468588; -------cGTCAGCAy
; cor=; Ncor=
a	0	0	0	0	0	0	0	5030.0	2394.0	0.0	1036.0	27228.0	14.0	0.0	27228.0	6741.0
c	0	0	0	0	0	0	0	14528.0	559.0	4.0	27228.0	0.0	22.0	27228.0	68.0	7983.0
g	0	0	0	0	0	0	0	1669.0	27228.0	0.0	0.0	8.0	27228.0	0.0	2768.0	5669.0
t	0	0	0	0	0	0	0	6001.0	47.0	27228.0	73.0	0.0	1008.0	1.0	581.0	6835.0
MA0495.3_shift6 (MAFF) 
; dyads_m8 versus MA0495.3 (MAFF); m=15/17; ncol2=16; w=10; offset=0; strand=D; shift=6; score=0.455439; ------rwGTCAGCAt
; cor=; Ncor=
a	0	0	0	0	0	0	11979.0	17645.0	3943.0	575.0	1728.0	36490.0	638.0	406.0	34456.0	7639.0
c	0	0	0	0	0	0	5573.0	4126.0	4218.0	369.0	35020.0	152.0	400.0	36228.0	559.0	4360.0
g	0	0	0	0	0	0	11122.0	5074.0	27742.0	409.0	330.0	444.0	33923.0	418.0	1041.0	4442.0
t	0	0	0	0	0	0	9072.0	10901.0	1843.0	36393.0	668.0	660.0	2785.0	694.0	1690.0	21305.0
MA1628.1_shift8 (Zic1::Zic2) 
; dyads_m8 versus MA1628.1 (Zic1::Zic2); m=16/17; ncol2=11; w=8; offset=2; strand=D; shift=8; score=0.443657; --------cvCAGCAG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	2072.0	3057.0	29.0	9238.0	96.0	75.0	8950.0	11.0
c	0	0	0	0	0	0	0	0	4620.0	2589.0	9594.0	384.0	195.0	9293.0	311.0	512.0
g	0	0	0	0	0	0	0	0	2206.0	2773.0	106.0	266.0	9527.0	96.0	627.0	9279.0
t	0	0	0	0	0	0	0	0	994.0	1473.0	163.0	4.0	74.0	428.0	4.0	90.0
MA0150.2_shift0 (Nfe2l2) 
; dyads_m8 versus MA0150.2 (Nfe2l2); m=17/17; ncol2=15; w=9; offset=-6; strand=D; shift=0; score=0.42374; casmrTGACTCAGCA-
; cor=; Ncor=
a	166.0	401.0	118.0	203.0	488.0	0.0	0.0	726.0	20.0	84.0	65.0	577.0	10.0	4.0	623.0	0
c	338.0	78.0	239.0	247.0	28.0	0.0	0.0	0.0	533.0	20.0	549.0	3.0	11.0	699.0	26.0	0
g	109.0	159.0	275.0	152.0	205.0	0.0	711.0	0.0	118.0	16.0	46.0	90.0	698.0	19.0	31.0	0
t	113.0	88.0	94.0	124.0	5.0	726.0	15.0	0.0	55.0	606.0	66.0	56.0	7.0	4.0	46.0	0