One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m17/peak-motifs_local_words_6nt_m17.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m17/peak-motifs_local_words_6nt_m17_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m17_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m17_shift0 (local_words_6nt_m17local_words_6nt_m17)
; local_words_6nt_m17 (local_words_6nt_m17local_words_6nt_m17); m=0 (reference); ncol1=24; shift=0; ncol=24; scwGCTGCTGTGGCAGCTGTCass ; Alignment reference a 7 8 27 3 1 6 2 3 3 0 5 2 4 0 48 1 1 1 0 3 2 30 8 6 c 16 37 6 4 50 1 1 44 2 1 3 1 2 51 1 4 52 1 1 5 43 8 17 21 g 21 4 8 44 2 0 50 2 2 50 3 45 42 1 1 48 1 1 54 2 6 7 19 15 t 11 6 14 4 2 48 2 6 48 4 44 7 7 3 5 2 1 52 0 45 4 10 11 13

MA1485.1_rc_shift9 (FERD3L_rc)
; local_words_6nt_m17 versus MA1485.1_rc (FERD3L_rc); m=1/9; ncol2=14; w=14; offset=9; strand=R; shift=9; score=0.455054; ---------GTrACAGCTGkyrC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0 0 0 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 0 0 0 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0 0 0 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0499.2_shift10 (MYOD1)
; local_words_6nt_m17 versus MA0499.2 (MYOD1); m=2/9; ncol2=13; w=13; offset=10; strand=D; shift=10; score=0.438323; ----------cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0796.1_rc_shift10 (TGIF1_rc)
; local_words_6nt_m17 versus MA0796.1_rc (TGIF1_rc); m=3/9; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.437754; ----------TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 0 0 0 0 0 0 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 0 0 0 0 0 0 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 0 0 0 0 0 0 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0

MA1571.1_rc_shift10 (TGIF2LX_rc)
; local_words_6nt_m17 versus MA1571.1_rc (TGIF2LX_rc); m=4/9; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.434337; ----------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 0 0 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 0 0 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 0 0 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0797.1_rc_shift10 (TGIF2_rc)
; local_words_6nt_m17 versus MA0797.1_rc (TGIF2_rc); m=5/9; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.434083; ----------TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 0 0 0 0 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 0 0 0 0 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 0 0 0 0 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1572.1_shift10 (TGIF2LY)
; local_words_6nt_m17 versus MA1572.1 (TGIF2LY); m=6/9; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.429183; ----------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 0 0 0 0 0 0 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 0 0 0 0 0 0 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 0 0 0 0 0 0 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0

MA1629.1_rc_shift0 (Zic2_rc)
; local_words_6nt_m17 versus MA1629.1_rc (Zic2_rc); m=7/9; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.421344; cyyCCTGCTGtGmk---------- ; cor=; Ncor= a 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 2506.0 0 0 0 0 0 0 0 0 0 0 c 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 2761.0 0 0 0 0 0 0 0 0 0 0 g 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 3507.0 0 0 0 0 0 0 0 0 0 0 t 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0 3145.0 0 0 0 0 0 0 0 0 0 0

MA0783.1_rc_shift10 (PKNOX2_rc)
; local_words_6nt_m17 versus MA0783.1_rc (PKNOX2_rc); m=8/9; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.415019; ----------TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 0 0 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 0 0 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 0 0 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0

MA0500.2_shift10 (MYOG)
; local_words_6nt_m17 versus MA0500.2 (MYOG); m=9/9; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.402461; ----------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 0 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 0 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 0 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m17_shift0 (local_words_6nt_m17local_words_6nt_m17)				; local_words_6nt_m17 (local_words_6nt_m17local_words_6nt_m17); m=0 (reference); ncol1=24; shift=0; ncol=24; scwGCTGCTGTGGCAGCTGTCass ; Alignment reference a 7 8 27 3 1 6 2 3 3 0 5 2 4 0 48 1 1 1 0 3 2 30 8 6 c 16 37 6 4 50 1 1 44 2 1 3 1 2 51 1 4 52 1 1 5 43 8 17 21 g 21 4 8 44 2 0 50 2 2 50 3 45 42 1 1 48 1 1 54 2 6 7 19 15 t 11 6 14 4 2 48 2 6 48 4 44 7 7 3 5 2 1 52 0 45 4 10 11 13
MA1485.1_rc_shift9 (FERD3L_rc)				; local_words_6nt_m17 versus MA1485.1_rc (FERD3L_rc); m=1/9; ncol2=14; w=14; offset=9; strand=R; shift=9; score=0.455054; ---------GTrACAGCTGkyrC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0 0 0 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 0 0 0 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0 0 0 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0
MA0499.2_shift10 (MYOD1)				; local_words_6nt_m17 versus MA0499.2 (MYOD1); m=2/9; ncol2=13; w=13; offset=10; strand=D; shift=10; score=0.438323; ----------cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA0796.1_rc_shift10 (TGIF1_rc)				; local_words_6nt_m17 versus MA0796.1_rc (TGIF1_rc); m=3/9; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.437754; ----------TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 0 0 0 0 0 0 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 0 0 0 0 0 0 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 0 0 0 0 0 0 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0
MA1571.1_rc_shift10 (TGIF2LX_rc)				; local_words_6nt_m17 versus MA1571.1_rc (TGIF2LX_rc); m=4/9; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.434337; ----------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 0 0 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 0 0 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 0 0 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0
MA0797.1_rc_shift10 (TGIF2_rc)				; local_words_6nt_m17 versus MA0797.1_rc (TGIF2_rc); m=5/9; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.434083; ----------TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 0 0 0 0 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 0 0 0 0 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 0 0 0 0 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0
MA1572.1_shift10 (TGIF2LY)				; local_words_6nt_m17 versus MA1572.1 (TGIF2LY); m=6/9; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.429183; ----------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 0 0 0 0 0 0 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 0 0 0 0 0 0 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 0 0 0 0 0 0 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0
MA1629.1_rc_shift0 (Zic2_rc)				; local_words_6nt_m17 versus MA1629.1_rc (Zic2_rc); m=7/9; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.421344; cyyCCTGCTGtGmk---------- ; cor=; Ncor= a 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 2506.0 0 0 0 0 0 0 0 0 0 0 c 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 2761.0 0 0 0 0 0 0 0 0 0 0 g 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 3507.0 0 0 0 0 0 0 0 0 0 0 t 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0 3145.0 0 0 0 0 0 0 0 0 0 0
MA0783.1_rc_shift10 (PKNOX2_rc)				; local_words_6nt_m17 versus MA0783.1_rc (PKNOX2_rc); m=8/9; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.415019; ----------TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 0 0 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 0 0 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 0 0 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0
MA0500.2_shift10 (MYOG)				; local_words_6nt_m17 versus MA0500.2 (MYOG); m=9/9; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.402461; ----------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 0 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 0 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 0 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0