One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m22/peak-motifs_local_words_6nt_m22.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m22/peak-motifs_local_words_6nt_m22_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m22_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m22_shift0 (local_words_6nt_m22local_words_6nt_m22)
; local_words_6nt_m22 (local_words_6nt_m22local_words_6nt_m22); m=0 (reference); ncol1=24; shift=0; ncol=24; mgTGACAGGTGGCAGCTGTCAcmr ; Alignment reference a 12 9 3 6 30 2 38 3 2 3 1 5 1 38 2 0 3 0 1 0 30 5 12 13 c 12 7 1 2 2 39 1 2 6 1 0 3 40 2 2 37 0 2 2 35 3 23 13 5 g 10 21 3 32 8 1 2 36 32 1 38 31 0 1 38 4 0 39 3 6 5 8 9 14 t 8 5 35 2 2 0 1 1 2 37 3 3 1 1 0 1 39 1 36 1 4 6 8 10

MA1485.1_shift8 (FERD3L)
; local_words_6nt_m22 versus MA1485.1 (FERD3L); m=1/8; ncol2=14; w=14; offset=8; strand=D; shift=8; score=0.462368; --------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0796.1_shift9 (TGIF1)
; local_words_6nt_m22 versus MA0796.1 (TGIF1); m=2/8; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.450678; ---------TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 0 c 0 0 0 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 0 t 0 0 0 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0 0

MA0783.1_shift2 (PKNOX2)
; local_words_6nt_m22 versus MA0783.1 (PKNOX2); m=3/8; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.44599; --TGACAGsTGTCA---------- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 0 0 0 0 0 0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0 0 0 0 0 0 0 0 0

MA1571.1_rc_shift9 (TGIF2LX_rc)
; local_words_6nt_m22 versus MA1571.1_rc (TGIF2LX_rc); m=4/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.445794; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 c 0 0 0 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 g 0 0 0 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0

MA0797.1_rc_shift9 (TGIF2_rc)
; local_words_6nt_m22 versus MA0797.1_rc (TGIF2_rc); m=5/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.445513; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 c 0 0 0 0 0 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 g 0 0 0 0 0 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 t 0 0 0 0 0 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0

MA1572.1_shift9 (TGIF2LY)
; local_words_6nt_m22 versus MA1572.1 (TGIF2LY); m=6/8; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.440185; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 c 0 0 0 0 0 0 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 g 0 0 0 0 0 0 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 t 0 0 0 0 0 0 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0

MA0499.2_shift9 (MYOD1)
; local_words_6nt_m22 versus MA0499.2 (MYOD1); m=7/8; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.416946; ---------cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; local_words_6nt_m22 versus MA0745.2_rc (SNAI2_rc); m=8/8; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.401907; -rykACAGGTGcrt---------- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 0 0 0 0 0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 0 0 0 0 0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 0 0 0 0 0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m22_shift0 (local_words_6nt_m22local_words_6nt_m22)				; local_words_6nt_m22 (local_words_6nt_m22local_words_6nt_m22); m=0 (reference); ncol1=24; shift=0; ncol=24; mgTGACAGGTGGCAGCTGTCAcmr ; Alignment reference a 12 9 3 6 30 2 38 3 2 3 1 5 1 38 2 0 3 0 1 0 30 5 12 13 c 12 7 1 2 2 39 1 2 6 1 0 3 40 2 2 37 0 2 2 35 3 23 13 5 g 10 21 3 32 8 1 2 36 32 1 38 31 0 1 38 4 0 39 3 6 5 8 9 14 t 8 5 35 2 2 0 1 1 2 37 3 3 1 1 0 1 39 1 36 1 4 6 8 10
MA1485.1_shift8 (FERD3L)				; local_words_6nt_m22 versus MA1485.1 (FERD3L); m=1/8; ncol2=14; w=14; offset=8; strand=D; shift=8; score=0.462368; --------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0
MA0796.1_shift9 (TGIF1)				; local_words_6nt_m22 versus MA0796.1 (TGIF1); m=2/8; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.450678; ---------TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 0 c 0 0 0 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 0 t 0 0 0 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0 0
MA0783.1_shift2 (PKNOX2)				; local_words_6nt_m22 versus MA0783.1 (PKNOX2); m=3/8; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.44599; --TGACAGsTGTCA---------- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 0 0 0 0 0 0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0 0 0 0 0 0 0 0 0
MA1571.1_rc_shift9 (TGIF2LX_rc)				; local_words_6nt_m22 versus MA1571.1_rc (TGIF2LX_rc); m=4/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.445794; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 c 0 0 0 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 g 0 0 0 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0
MA0797.1_rc_shift9 (TGIF2_rc)				; local_words_6nt_m22 versus MA0797.1_rc (TGIF2_rc); m=5/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.445513; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 c 0 0 0 0 0 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 g 0 0 0 0 0 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 t 0 0 0 0 0 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0
MA1572.1_shift9 (TGIF2LY)				; local_words_6nt_m22 versus MA1572.1 (TGIF2LY); m=6/8; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.440185; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 c 0 0 0 0 0 0 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 g 0 0 0 0 0 0 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 t 0 0 0 0 0 0 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0
MA0499.2_shift9 (MYOD1)				; local_words_6nt_m22 versus MA0499.2 (MYOD1); m=7/8; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.416946; ---------cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0
MA0745.2_rc_shift1 (SNAI2_rc)				; local_words_6nt_m22 versus MA0745.2_rc (SNAI2_rc); m=8/8; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.401907; -rykACAGGTGcrt---------- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 0 0 0 0 0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 0 0 0 0 0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 0 0 0 0 0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0 0 0 0 0 0 0 0