One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m23/peak-motifs_local_words_6nt_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m23/peak-motifs_local_words_6nt_m23_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m23_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m23_shift0 (local_words_6nt_m23local_words_6nt_m23)
; local_words_6nt_m23 (local_words_6nt_m23local_words_6nt_m23); m=0 (reference); ncol1=24; shift=0; ncol=24; rsaGACAGCTGTCACAGCAGCwgc ; Alignment reference a 22 8 30 4 39 0 49 1 1 3 0 5 4 45 4 45 5 3 43 0 1 13 11 12 c 12 21 4 2 3 49 0 9 45 2 0 3 42 3 39 0 3 41 0 1 46 9 5 17 g 13 16 10 43 5 0 1 38 4 2 48 2 1 1 5 1 40 3 2 46 0 5 31 10 t 3 5 6 1 3 1 0 2 0 43 2 40 3 1 2 4 2 3 5 3 3 23 3 11

MA1485.1_shift1 (FERD3L)
; local_words_6nt_m23 versus MA1485.1 (FERD3L); m=1/10; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.468554; -GyrmCAGCTGTyAC--------- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 0 0 0 0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 0 0 0 0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 0 0 0 0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0 0 0 0 0 0

MA0796.1_rc_shift2 (TGIF1_rc)
; local_words_6nt_m23 versus MA0796.1_rc (TGIF1_rc); m=2/10; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.45835; --TGACAGCTGTCA---------- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 0 0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 0 0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 0 0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0 0 0 0 0

MA1571.1_shift2 (TGIF2LX)
; local_words_6nt_m23 versus MA1571.1 (TGIF2LX); m=3/10; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.458293; --TGACAgcTGTCA---------- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 0 0 0 0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 0 0 0 0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 0 0 0 0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0 0 0 0 0 0

MA1572.1_shift2 (TGIF2LY)
; local_words_6nt_m23 versus MA1572.1 (TGIF2LY); m=4/10; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.455659; --TGACAgcTGTCA---------- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 0 0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 0 0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 0 0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0 0 0 0 0

MA0797.1_rc_shift2 (TGIF2_rc)
; local_words_6nt_m23 versus MA0797.1_rc (TGIF2_rc); m=5/10; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.45478; --TGACAsCTGTCA---------- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 0 0 0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 0 0 0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 0 0 0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0 0 0 0 0 0

MA0783.1_rc_shift2 (PKNOX2_rc)
; local_words_6nt_m23 versus MA0783.1_rc (PKNOX2_rc); m=6/10; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.441488; --TGACAsCTGTCA---------- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 0 0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0 0 0 0 0

MA1621.1_shift1 (Rbpjl)
; local_words_6nt_m23 versus MA1621.1 (Rbpjl); m=7/10; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.419959; -svmaCACCTGtsyc--------- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 0 0 0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 0 0 0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 0 0 0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0 0 0 0 0

MA1641.1_shift2 (MYF5)
; local_words_6nt_m23 versus MA1641.1 (MYF5); m=8/10; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.417908; --gvaCAGCTGtbc---------- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0 0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; local_words_6nt_m23 versus MA0832.1_rc (Tcf21_rc); m=9/10; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.413915; -ryAACAGCTGTTry--------- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 0 0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 0 0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 0 0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0 0 0 0

MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)
; local_words_6nt_m23 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=10/10; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.406907; --rmaCAGCTGtky---------- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m23_shift0 (local_words_6nt_m23local_words_6nt_m23)				; local_words_6nt_m23 (local_words_6nt_m23local_words_6nt_m23); m=0 (reference); ncol1=24; shift=0; ncol=24; rsaGACAGCTGTCACAGCAGCwgc ; Alignment reference a 22 8 30 4 39 0 49 1 1 3 0 5 4 45 4 45 5 3 43 0 1 13 11 12 c 12 21 4 2 3 49 0 9 45 2 0 3 42 3 39 0 3 41 0 1 46 9 5 17 g 13 16 10 43 5 0 1 38 4 2 48 2 1 1 5 1 40 3 2 46 0 5 31 10 t 3 5 6 1 3 1 0 2 0 43 2 40 3 1 2 4 2 3 5 3 3 23 3 11
MA1485.1_shift1 (FERD3L)				; local_words_6nt_m23 versus MA1485.1 (FERD3L); m=1/10; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.468554; -GyrmCAGCTGTyAC--------- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 0 0 0 0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 0 0 0 0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 0 0 0 0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0 0 0 0 0 0
MA0796.1_rc_shift2 (TGIF1_rc)				; local_words_6nt_m23 versus MA0796.1_rc (TGIF1_rc); m=2/10; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.45835; --TGACAGCTGTCA---------- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 0 0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 0 0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 0 0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0 0 0 0 0
MA1571.1_shift2 (TGIF2LX)				; local_words_6nt_m23 versus MA1571.1 (TGIF2LX); m=3/10; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.458293; --TGACAgcTGTCA---------- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 0 0 0 0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 0 0 0 0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 0 0 0 0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0 0 0 0 0 0
MA1572.1_shift2 (TGIF2LY)				; local_words_6nt_m23 versus MA1572.1 (TGIF2LY); m=4/10; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.455659; --TGACAgcTGTCA---------- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 0 0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 0 0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 0 0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0 0 0 0 0
MA0797.1_rc_shift2 (TGIF2_rc)				; local_words_6nt_m23 versus MA0797.1_rc (TGIF2_rc); m=5/10; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.45478; --TGACAsCTGTCA---------- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 0 0 0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 0 0 0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 0 0 0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0 0 0 0 0 0
MA0783.1_rc_shift2 (PKNOX2_rc)				; local_words_6nt_m23 versus MA0783.1_rc (PKNOX2_rc); m=6/10; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.441488; --TGACAsCTGTCA---------- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 0 0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0 0 0 0 0
MA1621.1_shift1 (Rbpjl)				; local_words_6nt_m23 versus MA1621.1 (Rbpjl); m=7/10; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.419959; -svmaCACCTGtsyc--------- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 0 0 0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 0 0 0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 0 0 0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0 0 0 0 0
MA1641.1_shift2 (MYF5)				; local_words_6nt_m23 versus MA1641.1 (MYF5); m=8/10; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.417908; --gvaCAGCTGtbc---------- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0 0 0 0
MA0832.1_rc_shift1 (Tcf21_rc)				; local_words_6nt_m23 versus MA0832.1_rc (Tcf21_rc); m=9/10; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.413915; -ryAACAGCTGTTry--------- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 0 0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 0 0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 0 0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0 0 0 0
MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)				; local_words_6nt_m23 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=10/10; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.406907; --rmaCAGCTGtky---------- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0 0 0 0