One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m27/peak-motifs_local_words_6nt_m27.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m27/peak-motifs_local_words_6nt_m27_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m27_shift0 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m27_shift0 (local_words_6nt_m27local_words_6nt_m27)
; local_words_6nt_m27 (local_words_6nt_m27local_words_6nt_m27); m=0 (reference); ncol1=20; shift=0; ncol=20; ssctCAGCTGTCACAGCygc ; Alignment reference a 81 71 39 87 4 395 8 9 8 0 15 3 348 10 335 16 31 78 77 85 c 117 142 281 40 397 4 18 400 4 6 49 382 32 383 28 20 323 110 104 150 g 133 108 52 49 8 8 385 5 4 406 7 21 8 15 17 359 33 51 167 86 t 87 97 46 242 9 11 7 4 402 6 347 12 30 10 38 23 31 179 70 97

MA1485.1_shift0 (FERD3L)
; local_words_6nt_m27 versus MA1485.1 (FERD3L); m=1/16; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.566659; GyrmCAGCTGTyAC------ ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0 0 0

MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; local_words_6nt_m27 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=2/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.498734; -rmaCAGCTGtky------- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0

MA1641.1_shift1 (MYF5)
; local_words_6nt_m27 versus MA1641.1 (MYF5); m=3/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.498701; -gvaCAGCTGtbc------- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; local_words_6nt_m27 versus MA0521.1_rc (Tcf12_rc); m=4/16; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.487387; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0

MA0499.2_shift1 (MYOD1)
; local_words_6nt_m27 versus MA0499.2 (MYOD1); m=5/16; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.487129; -cwgCACCTGTymy------ ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0 0

MA1571.1_shift1 (TGIF2LX)
; local_words_6nt_m27 versus MA1571.1 (TGIF2LX); m=6/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.476886; -TGACAgcTGTCA------- ; cor=; Ncor= a 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 0 0 c 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 0 0 g 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 0 0 t 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0 0 0

MA0796.1_rc_shift1 (TGIF1_rc)
; local_words_6nt_m27 versus MA0796.1_rc (TGIF1_rc); m=7/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.476365; -TGACAGCTGTCA------- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; local_words_6nt_m27 versus MA0500.2 (MYOG); m=8/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.470368; -sarCAGCTGyts------- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0

MA1572.1_shift1 (TGIF2LY)
; local_words_6nt_m27 versus MA1572.1 (TGIF2LY); m=9/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.468511; -TGACAgcTGTCA------- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0 0

MA0797.1_rc_shift1 (TGIF2_rc)
; local_words_6nt_m27 versus MA0797.1_rc (TGIF2_rc); m=10/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.467625; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0 0 0

MA1593.1_rc_shift1 (ZNF317_rc)
; local_words_6nt_m27 versus MA1593.1_rc (ZNF317_rc); m=11/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.448467; -wrTCTGCTGTyw------- ; cor=; Ncor= a 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0 0 0 0 0 0 0 0 c 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0 0 0 0 0 0 0 0 g 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0 0 0 0 0 0 0 0 t 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0 0 0 0 0 0 0 0

MA0783.1_rc_shift1 (PKNOX2_rc)
; local_words_6nt_m27 versus MA0783.1_rc (PKNOX2_rc); m=12/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.444295; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; local_words_6nt_m27 versus MA1467.1 (ATOH1(var.2)); m=13/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.427219; --AACAGCTGTY-------- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0 0

MA1620.1_shift1 (Ptf1a(var.3))
; local_words_6nt_m27 versus MA1620.1 (Ptf1a(var.3)); m=14/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.424851; -rmaCACCTGtky------- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; local_words_6nt_m27 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=15/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.418116; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; local_words_6nt_m27 versus MA1472.1 (BHLHA15(var.2)); m=16/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.411495; --avCAGCTGyy-------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m27_shift0 (local_words_6nt_m27local_words_6nt_m27)				; local_words_6nt_m27 (local_words_6nt_m27local_words_6nt_m27); m=0 (reference); ncol1=20; shift=0; ncol=20; ssctCAGCTGTCACAGCygc ; Alignment reference a 81 71 39 87 4 395 8 9 8 0 15 3 348 10 335 16 31 78 77 85 c 117 142 281 40 397 4 18 400 4 6 49 382 32 383 28 20 323 110 104 150 g 133 108 52 49 8 8 385 5 4 406 7 21 8 15 17 359 33 51 167 86 t 87 97 46 242 9 11 7 4 402 6 347 12 30 10 38 23 31 179 70 97
MA1485.1_shift0 (FERD3L)				; local_words_6nt_m27 versus MA1485.1 (FERD3L); m=1/16; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.566659; GyrmCAGCTGTyAC------ ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0 0 0
MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)				; local_words_6nt_m27 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=2/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.498734; -rmaCAGCTGtky------- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0
MA1641.1_shift1 (MYF5)				; local_words_6nt_m27 versus MA1641.1 (MYF5); m=3/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.498701; -gvaCAGCTGtbc------- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; local_words_6nt_m27 versus MA0521.1_rc (Tcf12_rc); m=4/16; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.487387; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0
MA0499.2_shift1 (MYOD1)				; local_words_6nt_m27 versus MA0499.2 (MYOD1); m=5/16; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.487129; -cwgCACCTGTymy------ ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0 0
MA1571.1_shift1 (TGIF2LX)				; local_words_6nt_m27 versus MA1571.1 (TGIF2LX); m=6/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.476886; -TGACAgcTGTCA------- ; cor=; Ncor= a 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 0 0 c 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 0 0 g 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 0 0 t 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0 0 0
MA0796.1_rc_shift1 (TGIF1_rc)				; local_words_6nt_m27 versus MA0796.1_rc (TGIF1_rc); m=7/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.476365; -TGACAGCTGTCA------- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0 0
MA0500.2_shift1 (MYOG)				; local_words_6nt_m27 versus MA0500.2 (MYOG); m=8/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.470368; -sarCAGCTGyts------- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0
MA1572.1_shift1 (TGIF2LY)				; local_words_6nt_m27 versus MA1572.1 (TGIF2LY); m=9/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.468511; -TGACAgcTGTCA------- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0 0
MA0797.1_rc_shift1 (TGIF2_rc)				; local_words_6nt_m27 versus MA0797.1_rc (TGIF2_rc); m=10/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.467625; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0 0 0
MA1593.1_rc_shift1 (ZNF317_rc)				; local_words_6nt_m27 versus MA1593.1_rc (ZNF317_rc); m=11/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.448467; -wrTCTGCTGTyw------- ; cor=; Ncor= a 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0 0 0 0 0 0 0 0 c 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0 0 0 0 0 0 0 0 g 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0 0 0 0 0 0 0 0 t 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0 0 0 0 0 0 0 0
MA0783.1_rc_shift1 (PKNOX2_rc)				; local_words_6nt_m27 versus MA0783.1_rc (PKNOX2_rc); m=12/16; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.444295; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0 0
MA1467.1_shift2 (ATOH1(var.2))				; local_words_6nt_m27 versus MA1467.1 (ATOH1(var.2)); m=13/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.427219; --AACAGCTGTY-------- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0 0
MA1620.1_shift1 (Ptf1a(var.3))				; local_words_6nt_m27 versus MA1620.1 (Ptf1a(var.3)); m=14/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.424851; -rmaCACCTGtky------- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; local_words_6nt_m27 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=15/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.418116; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; local_words_6nt_m27 versus MA1472.1 (BHLHA15(var.2)); m=16/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.411495; --avCAGCTGyy-------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0 0