One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m3/peak-motifs_local_words_6nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m3/peak-motifs_local_words_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m3_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m3_shift0 (local_words_6nt_m3local_words_6nt_m3)
; local_words_6nt_m3 (local_words_6nt_m3local_words_6nt_m3); m=0 (reference); ncol1=20; shift=0; ncol=20; sgCTGGCAGCAGCTGGcsbs ; Alignment reference a 70 96 42 43 13 26 16 475 21 4 479 5 2 23 4 14 83 103 92 76 c 129 114 354 33 19 13 453 4 11 493 3 4 475 8 6 39 274 151 136 153 g 247 203 67 32 448 456 29 12 470 5 4 491 16 7 493 422 98 169 131 172 t 59 92 42 397 25 10 7 14 3 3 19 5 12 467 2 30 50 82 146 104

MA1485.1_shift5 (FERD3L)
; local_words_6nt_m3 versus MA1485.1 (FERD3L); m=1/9; ncol2=14; w=14; offset=5; strand=D; shift=5; score=0.501376; -----GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0500.2_rc_shift6 (MYOG_rc)
; local_words_6nt_m3 versus MA0500.2_rc (MYOG_rc); m=2/9; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.489447; ------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0521.1_shift7 (Tcf12)
; local_words_6nt_m3 versus MA0521.1 (Tcf12); m=3/9; ncol2=11; w=11; offset=7; strand=D; shift=7; score=0.457656; -------rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1619.1_rc_shift6 (Ptf1a(var.2)_rc)
; local_words_6nt_m3 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/9; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.439956; ------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1641.1_rc_shift6 (MYF5_rc)
; local_words_6nt_m3 versus MA1641.1_rc (MYF5_rc); m=5/9; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.434775; ------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA0816.1_rc_shift7 (Ascl2_rc)
; local_words_6nt_m3 versus MA0816.1_rc (Ascl2_rc); m=6/9; ncol2=10; w=10; offset=7; strand=R; shift=7; score=0.423778; -------rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; local_words_6nt_m3 versus MA1635.1 (BHLHE22(var.2)); m=7/9; ncol2=10; w=10; offset=7; strand=D; shift=7; score=0.421431; -------csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1100.2_shift7 (ASCL1)
; local_words_6nt_m3 versus MA1100.2 (ASCL1); m=8/9; ncol2=10; w=10; offset=7; strand=D; shift=7; score=0.415395; -------rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1472.1_shift7 (BHLHA15(var.2))
; local_words_6nt_m3 versus MA1472.1 (BHLHA15(var.2)); m=9/9; ncol2=10; w=10; offset=7; strand=D; shift=7; score=0.411713; -------avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m3_shift0 (local_words_6nt_m3local_words_6nt_m3)				; local_words_6nt_m3 (local_words_6nt_m3local_words_6nt_m3); m=0 (reference); ncol1=20; shift=0; ncol=20; sgCTGGCAGCAGCTGGcsbs ; Alignment reference a 70 96 42 43 13 26 16 475 21 4 479 5 2 23 4 14 83 103 92 76 c 129 114 354 33 19 13 453 4 11 493 3 4 475 8 6 39 274 151 136 153 g 247 203 67 32 448 456 29 12 470 5 4 491 16 7 493 422 98 169 131 172 t 59 92 42 397 25 10 7 14 3 3 19 5 12 467 2 30 50 82 146 104
MA1485.1_shift5 (FERD3L)				; local_words_6nt_m3 versus MA1485.1 (FERD3L); m=1/9; ncol2=14; w=14; offset=5; strand=D; shift=5; score=0.501376; -----GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0
MA0500.2_rc_shift6 (MYOG_rc)				; local_words_6nt_m3 versus MA0500.2_rc (MYOG_rc); m=2/9; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.489447; ------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA0521.1_shift7 (Tcf12)				; local_words_6nt_m3 versus MA0521.1 (Tcf12); m=3/9; ncol2=11; w=11; offset=7; strand=D; shift=7; score=0.457656; -------rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA1619.1_rc_shift6 (Ptf1a(var.2)_rc)				; local_words_6nt_m3 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/9; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.439956; ------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0
MA1641.1_rc_shift6 (MYF5_rc)				; local_words_6nt_m3 versus MA1641.1_rc (MYF5_rc); m=5/9; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.434775; ------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0
MA0816.1_rc_shift7 (Ascl2_rc)				; local_words_6nt_m3 versus MA0816.1_rc (Ascl2_rc); m=6/9; ncol2=10; w=10; offset=7; strand=R; shift=7; score=0.423778; -------rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0
MA1635.1_shift7 (BHLHE22(var.2))				; local_words_6nt_m3 versus MA1635.1 (BHLHE22(var.2)); m=7/9; ncol2=10; w=10; offset=7; strand=D; shift=7; score=0.421431; -------csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0
MA1100.2_shift7 (ASCL1)				; local_words_6nt_m3 versus MA1100.2 (ASCL1); m=8/9; ncol2=10; w=10; offset=7; strand=D; shift=7; score=0.415395; -------rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA1472.1_shift7 (BHLHA15(var.2))				; local_words_6nt_m3 versus MA1472.1 (BHLHA15(var.2)); m=9/9; ncol2=10; w=10; offset=7; strand=D; shift=7; score=0.411713; -------avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0