One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m31/peak-motifs_local_words_6nt_m31.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m31/peak-motifs_local_words_6nt_m31_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m31_shift1 ; 43 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
local_words_6nt_m31_shift1 (local_words_6nt_m31local_words_6nt_m31)     
; local_words_6nt_m31 (local_words_6nt_m31local_words_6nt_m31); m=0 (reference); ncol1=11; shift=1; ncol=14; -srGCAGATGgc--
; Alignment reference
a	0	822	1475	632	1	3646	0	3682	0	10	672	722	0	0
c	0	940	322	243	3666	19	0	0	5	7	909	1263	0	0
g	0	1193	1022	2587	1	17	3669	0	0	3664	1302	813	0	0
t	0	727	863	220	14	0	13	0	3677	1	799	884	0	0
MA1638.1_shift2 (HAND2) 
; local_words_6nt_m31 versus MA1638.1 (HAND2); m=1/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.873695; --amCAGATGby--
; cor=; Ncor=
a	0	0	10136.0	8836.0	19.0	29222.0	12.0	30192.0	14.0	234.0	5217.0	6165.0	0	0
c	0	0	5564.0	11298.0	30062.0	410.0	42.0	30.0	2276.0	149.0	7690.0	10227.0	0	0
g	0	0	7463.0	6994.0	132.0	647.0	30144.0	38.0	31.0	29851.0	8878.0	6108.0	0	0
t	0	0	7120.0	3155.0	70.0	4.0	85.0	23.0	27962.0	49.0	8498.0	7783.0	0	0
MA1642.1_shift0 (NEUROG2(var.2)) 
; local_words_6nt_m31 versus MA1642.1 (NEUROG2(var.2)); m=2/42; ncol2=13; w=11; offset=-1; strand=D; shift=0; score=0.792266; rrraCAGATGGyv-
; cor=; Ncor=
a	8690.0	9047.0	12089.0	16448.0	278.0	33720.0	400.0	32746.0	649.0	280.0	1523.0	6665.0	9464.0	0
c	7353.0	6843.0	6467.0	8154.0	33559.0	211.0	793.0	952.0	904.0	205.0	2966.0	10441.0	9034.0	0
g	10813.0	10123.0	11114.0	8039.0	317.0	301.0	30392.0	418.0	323.0	33422.0	24998.0	7581.0	8709.0	0
t	7535.0	8378.0	4721.0	1750.0	237.0	159.0	2806.0	275.0	32515.0	484.0	4904.0	9704.0	7184.0	0
MA1648.1_rc_shift1 (TCF12(var.2)_rc) 
; local_words_6nt_m31 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/42; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.780048; -srGCAGGTGss--
; cor=; Ncor=
a	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0	0	0
c	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0	0	0
g	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0	0	0
t	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0	0	0
MA0522.3_rc_shift1 (TCF3_rc) 
; local_words_6nt_m31 versus MA0522.3_rc (TCF3_rc); m=4/42; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.778841; -ssGCAGGTGbs--
; cor=; Ncor=
a	0	6432.0	7233.0	1237.0	492.0	27539.0	283.0	950.0	375.0	705.0	4528.0	6240.0	0	0
c	0	9222.0	8025.0	987.0	28642.0	1339.0	2652.0	1362.0	1574.0	708.0	9432.0	8539.0	0	0
g	0	10122.0	8727.0	28742.0	1038.0	2003.0	27199.0	28640.0	396.0	29379.0	9269.0	10212.0	0	0
t	0	5485.0	7276.0	295.0	1089.0	380.0	1127.0	309.0	28916.0	469.0	8032.0	6270.0	0	0
MA1109.1_shift1 (NEUROD1) 
; local_words_6nt_m31 versus MA1109.1 (NEUROD1); m=5/42; ncol2=13; w=11; offset=0; strand=D; shift=1; score=0.772896; -graCAGATGGyrs
; cor=; Ncor=
a	0	561.0	755.0	1289.0	17.0	2241.0	16.0	2034.0	55.0	13.0	59.0	373.0	692.0	538.0
c	0	429.0	323.0	452.0	2240.0	7.0	24.0	150.0	51.0	7.0	93.0	911.0	540.0	591.0
g	0	726.0	906.0	494.0	13.0	16.0	2152.0	77.0	19.0	2231.0	1962.0	418.0	599.0	628.0
t	0	566.0	298.0	47.0	12.0	18.0	90.0	21.0	2157.0	31.0	168.0	580.0	451.0	525.0
MA1618.1_shift1 (Ptf1a) 
; local_words_6nt_m31 versus MA1618.1 (Ptf1a); m=6/42; ncol2=13; w=11; offset=0; strand=D; shift=1; score=0.760527; -dmaCAGATGttkh
; cor=; Ncor=
a	0	4092.0	4476.0	8554.0	133.0	14064.0	250.0	12132.0	126.0	241.0	965.0	1511.0	3491.0	3754.0
c	0	2989.0	3662.0	2747.0	14006.0	118.0	466.0	1724.0	224.0	122.0	2058.0	2341.0	3601.0	3689.0
g	0	3661.0	3568.0	2414.0	130.0	153.0	13072.0	437.0	118.0	13868.0	2854.0	2295.0	3664.0	3376.0
t	0	3699.0	2735.0	726.0	172.0	106.0	653.0	148.0	13973.0	210.0	8564.0	8294.0	3685.0	3622.0
MA0103.3_rc_shift1 (ZEB1_rc) 
; local_words_6nt_m31 versus MA0103.3_rc (ZEB1_rc); m=7/42; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.755512; -sssCAGGTGss--
; cor=; Ncor=
a	0	3856.0	3153.0	3408.0	129.0	19269.0	30.0	122.0	1.0	662.0	4715.0	3692.0	0	0
c	0	5828.0	6601.0	5178.0	19381.0	355.0	649.0	97.0	223.0	158.0	5179.0	5228.0	0	0
g	0	6955.0	6117.0	9561.0	178.0	501.0	19257.0	19878.0	0.0	19195.0	5550.0	7998.0	0	0
t	0	3490.0	4258.0	1982.0	441.0	4.0	193.0	32.0	19905.0	114.0	4685.0	3211.0	0	0
MA1100.2_shift2 (ASCL1) 
; local_words_6nt_m31 versus MA1100.2 (ASCL1); m=8/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.73514; --rrCAGCTGcy--
; cor=; Ncor=
a	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0	0	0
c	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0	0	0
g	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0	0	0
t	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0	0	0
MA1123.2_shift0 (TWIST1) 
; local_words_6nt_m31 versus MA1123.2 (TWIST1); m=9/42; ncol2=13; w=11; offset=-1; strand=D; shift=0; score=0.731984; awwCCAGATGtbt-
; cor=; Ncor=
a	8329.0	7822.0	7536.0	3733.0	377.0	26713.0	440.0	24524.0	357.0	380.0	1801.0	4070.0	6823.0	0
c	5761.0	5530.0	4597.0	20412.0	26665.0	136.0	1320.0	1687.0	456.0	396.0	2919.0	7402.0	6561.0	0
g	6485.0	5722.0	5772.0	2336.0	117.0	210.0	24166.0	908.0	288.0	25975.0	4069.0	7273.0	6213.0	0
t	6758.0	8259.0	9428.0	852.0	174.0	274.0	1407.0	214.0	26232.0	582.0	18544.0	8588.0	7736.0	0
MA1472.1_rc_shift2 (BHLHA15(var.2)_rc) 
; local_words_6nt_m31 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=10/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.728551; --rrCAGCTGbt--
; cor=; Ncor=
a	0	0	577.0	1015.0	0.0	1504.0	11.0	467.0	137.0	33.0	81.0	170.0	0	0
c	0	0	316.0	489.0	1504.0	0.0	72.0	1504.0	33.0	6.0	591.0	357.0	0	0
g	0	0	410.0	610.0	0.0	4.0	1504.0	30.0	33.0	1504.0	607.0	281.0	0	0
t	0	0	202.0	54.0	0.0	54.0	445.0	11.0	1504.0	47.0	897.0	697.0	0	0
MA0521.1_rc_shift1 (Tcf12_rc) 
; local_words_6nt_m31 versus MA0521.1_rc (Tcf12_rc); m=11/42; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.715132; -cwsCAGCTGYy--
; cor=; Ncor=
a	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0
c	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0
g	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0
t	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0
MA0816.1_rc_shift2 (Ascl2_rc) 
; local_words_6nt_m31 versus MA0816.1_rc (Ascl2_rc); m=12/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.707429; --rrCAGCTGyt--
; cor=; Ncor=
a	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0	0	0
c	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0	0	0
g	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0	0	0
t	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0	0	0
MA0500.2_rc_shift1 (MYOG_rc) 
; local_words_6nt_m31 versus MA0500.2_rc (MYOG_rc); m=13/42; ncol2=12; w=11; offset=0; strand=R; shift=1; score=0.700941; -sarCAGCTGyts-
; cor=; Ncor=
a	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0	0
c	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0	0
g	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0	0
t	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0	0
MA0461.2_shift2 (Atoh1) 
; local_words_6nt_m31 versus MA0461.2 (Atoh1); m=14/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.691512; --rmCATATGky--
; cor=; Ncor=
a	0	0	655.0	523.0	42.0	1027.0	17.0	1027.0	22.0	2.0	34.0	128.0	0	0
c	0	0	108.0	334.0	1027.0	20.0	10.0	74.0	4.0	1.0	234.0	494.0	0	0
g	0	0	372.0	149.0	8.0	34.0	136.0	0.0	5.0	1027.0	376.0	126.0	0	0
t	0	0	59.0	21.0	0.0	0.0	1027.0	0.0	1027.0	31.0	384.0	533.0	0	0
MA1635.1_shift2 (BHLHE22(var.2)) 
; local_words_6nt_m31 versus MA1635.1 (BHLHE22(var.2)); m=15/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.688461; --csCAGCTGsg--
; cor=; Ncor=
a	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0
c	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0
g	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0
t	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0
MA1468.1_rc_shift2 (ATOH7_rc) 
; local_words_6nt_m31 versus MA1468.1_rc (ATOH7_rc); m=16/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.687364; --rmCATATGkT--
; cor=; Ncor=
a	0	0	312.0	291.0	0.0	712.0	0.0	712.0	58.0	0.0	45.0	62.0	0	0
c	0	0	2.0	261.0	712.0	25.0	78.0	59.0	102.0	0.0	154.0	142.0	0	0
g	0	0	400.0	155.0	0.0	25.0	180.0	106.0	0.0	712.0	211.0	97.0	0	0
t	0	0	17.0	5.0	0.0	0.0	712.0	15.0	712.0	0.0	302.0	712.0	0	0
MA1558.1_shift2 (SNAI1) 
; local_words_6nt_m31 versus MA1558.1 (SNAI1); m=17/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.686676; --drCAGGTGyr--
; cor=; Ncor=
a	0	0	5274.0	6993.0	446.0	19982.0	1766.0	72.0	38.0	706.0	1639.0	10088.0	0	0
c	0	0	3187.0	501.0	19982.0	297.0	517.0	5.0	0.0	0.0	10938.0	4592.0	0	0
g	0	0	6410.0	12989.0	275.0	91.0	19982.0	19982.0	42.0	19982.0	5306.0	9894.0	0	0
t	0	0	5112.0	3518.0	340.0	568.0	306.0	28.0	19982.0	311.0	9044.0	6356.0	0	0
MA1108.2_shift2 (MXI1) 
; local_words_6nt_m31 versus MA1108.2 (MXI1); m=18/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.682214; --rvCACATGkc--
; cor=; Ncor=
a	0	0	5786.0	6184.0	109.0	21870.0	10.0	20506.0	0.0	527.0	2833.0	4945.0	0	0
c	0	0	4724.0	5841.0	21382.0	1.0	21552.0	0.0	507.0	114.0	5329.0	6343.0	0	0
g	0	0	6326.0	6078.0	97.0	170.0	18.0	1542.0	0.0	21232.0	7228.0	5394.0	0	0
t	0	0	5212.0	3945.0	460.0	7.0	468.0	0.0	21541.0	175.0	6658.0	5366.0	0	0
MA0100.3_rc_shift2 (MYB_rc) 
; local_words_6nt_m31 versus MA0100.3_rc (MYB_rc); m=19/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.681865; --kdCAGTTGvk--
; cor=; Ncor=
a	0	0	352.0	497.0	0.0	1398.0	0.0	6.0	7.0	9.0	410.0	380.0	0	0
c	0	0	225.0	147.0	1516.0	68.0	0.0	0.0	39.0	5.0	397.0	300.0	0	0
g	0	0	528.0	482.0	3.0	60.0	1527.0	2.0	3.0	1513.0	428.0	422.0	0	0
t	0	0	422.0	401.0	8.0	1.0	0.0	1519.0	1478.0	0.0	292.0	425.0	0	0
MA0048.2_rc_shift2 (NHLH1_rc) 
; local_words_6nt_m31 versus MA0048.2_rc (NHLH1_rc); m=20/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.678849; --mGCAGCTGCg--
; cor=; Ncor=
a	0	0	1489.0	350.0	1.0	2166.0	0.0	114.0	0.0	0.0	142.0	111.0	0	0
c	0	0	2166.0	102.0	2166.0	4.0	124.0	2166.0	1.0	0.0	2166.0	181.0	0	0
g	0	0	736.0	2166.0	4.0	4.0	2166.0	301.0	3.0	2166.0	179.0	2166.0	0	0
t	0	0	308.0	296.0	2.0	0.0	96.0	0.0	2166.0	3.0	461.0	788.0	0	0
MA1570.1_rc_shift2 (TFAP4(var.2)_rc) 
; local_words_6nt_m31 versus MA1570.1_rc (TFAP4(var.2)_rc); m=21/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.670048; --amCAyrTGdt--
; cor=; Ncor=
a	0	0	479.0	206.0	0.0	479.0	0.0	479.0	0.0	0.0	129.0	39.0	0	0
c	0	0	110.0	156.0	479.0	0.0	287.0	161.0	14.0	0.0	0.0	197.0	0	0
g	0	0	210.0	14.0	3.0	0.0	149.0	220.0	0.0	479.0	144.0	130.0	0	0
t	0	0	60.0	103.0	0.0	0.0	479.0	0.0	479.0	0.0	217.0	479.0	0	0
MA1631.1_rc_shift0 (ASCL1(var.2)_rc) 
; local_words_6nt_m31 versus MA1631.1_rc (ASCL1(var.2)_rc); m=22/42; ncol2=13; w=11; offset=-1; strand=R; shift=0; score=0.667473; gsrGCAGGTGchg-
; cor=; Ncor=
a	8032.0	7779.0	9017.0	2394.0	249.0	32756.0	151.0	815.0	618.0	289.0	3290.0	8805.0	7347.0	0
c	8356.0	8939.0	2966.0	2719.0	33411.0	492.0	607.0	3209.0	860.0	321.0	18576.0	8601.0	8371.0	0
g	11996.0	10555.0	17883.0	28844.0	445.0	740.0	33402.0	30169.0	563.0	33562.0	6654.0	7998.0	11805.0	0
t	5972.0	7083.0	4490.0	399.0	251.0	368.0	196.0	163.0	32315.0	184.0	5836.0	8952.0	6833.0	0
MA0698.1_shift0 (ZBTB18) 
; local_words_6nt_m31 versus MA0698.1 (ZBTB18); m=23/42; ncol2=13; w=11; offset=-1; strand=D; shift=0; score=0.666313; hatCCAGATGTkb-
; cor=; Ncor=
a	3561.0	7064.0	1177.0	3618.0	21.0	13670.0	3.0	13670.0	14.0	3.0	48.0	210.0	1725.0	0
c	4188.0	753.0	1937.0	13670.0	13670.0	5.0	245.0	1048.0	15.0	1.0	314.0	177.0	4042.0	0
g	2499.0	2535.0	5212.0	1899.0	3.0	33.0	13670.0	278.0	94.0	13670.0	36.0	5530.0	3876.0	0
t	3423.0	3319.0	13670.0	60.0	8.0	206.0	6.0	297.0	13670.0	1.0	13670.0	8140.0	4027.0	0
MA0818.1_rc_shift2 (BHLHE22_rc) 
; local_words_6nt_m31 versus MA0818.1_rc (BHLHE22_rc); m=24/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.664821; --rrCATATGkT--
; cor=; Ncor=
a	0	0	520.0	201.0	4.0	520.0	2.0	520.0	8.0	0.0	4.0	21.0	0	0
c	0	0	21.0	123.0	520.0	0.0	2.0	0.0	24.0	0.0	99.0	172.0	0	0
g	0	0	254.0	193.0	2.0	48.0	4.0	2.0	6.0	520.0	229.0	26.0	0	0
t	0	0	36.0	4.0	0.0	11.0	520.0	0.0	520.0	6.0	189.0	520.0	0	0
MA0820.1_rc_shift2 (FIGLA_rc) 
; local_words_6nt_m31 versus MA0820.1_rc (FIGLA_rc); m=25/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.662401; --wmCAGGTGkw--
; cor=; Ncor=
a	0	0	753.0	832.0	65.0	1780.0	0.0	0.0	14.0	29.0	237.0	449.0	0	0
c	0	0	289.0	569.0	1780.0	17.0	311.0	527.0	0.0	0.0	160.0	175.0	0	0
g	0	0	283.0	225.0	33.0	0.0	1780.0	1780.0	46.0	1780.0	693.0	270.0	0	0
t	0	0	455.0	154.0	36.0	56.0	9.0	0.0	1780.0	0.0	690.0	886.0	0	0
MA1619.1_rc_shift1 (Ptf1a(var.2)_rc) 
; local_words_6nt_m31 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=26/42; ncol2=12; w=11; offset=0; strand=R; shift=1; score=0.661608; -rmaCAGCTGtky-
; cor=; Ncor=
a	0	1871.0	1974.0	4341.0	49.0	7121.0	33.0	223.0	28.0	27.0	529.0	1216.0	1607.0	0
c	0	1803.0	2426.0	1065.0	7150.0	40.0	299.0	6689.0	65.0	28.0	1308.0	1629.0	1974.0	0
g	0	1977.0	1632.0	1312.0	27.0	66.0	6697.0	307.0	41.0	7149.0	1070.0	2430.0	1803.0	0
t	0	1602.0	1221.0	535.0	27.0	26.0	224.0	34.0	7119.0	49.0	4346.0	1978.0	1869.0	0
MA1524.1_rc_shift1 (MSGN1_rc) 
; local_words_6nt_m31 versus MA1524.1_rc (MSGN1_rc); m=27/42; ncol2=12; w=11; offset=0; strand=R; shift=1; score=0.661327; -srmCAwwTGGys-
; cor=; Ncor=
a	0	1228.0	3104.0	3269.0	0.0	6373.0	2607.0	3950.0	0.0	0.0	726.0	408.0	1488.0	0
c	0	1781.0	1503.0	3104.0	6373.0	17.0	814.0	112.0	374.0	17.0	1613.0	3277.0	1615.0	0
g	0	1976.0	3269.0	1132.0	10.0	287.0	190.0	627.0	0.0	6373.0	6373.0	576.0	2080.0	0
t	0	1388.0	514.0	412.0	0.0	10.0	3766.0	2424.0	6373.0	0.0	663.0	3096.0	1190.0	0
MA0668.1_rc_shift2 (NEUROD2_rc) 
; local_words_6nt_m31 versus MA0668.1_rc (NEUROD2_rc); m=28/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.66132; --rmCATATGky--
; cor=; Ncor=
a	0	0	685.0	548.0	112.0	1587.0	4.0	1587.0	52.0	0.0	0.0	95.0	0	0
c	0	0	101.0	705.0	1587.0	0.0	38.0	0.0	308.0	95.0	240.0	769.0	0	0
g	0	0	592.0	373.0	0.0	328.0	120.0	156.0	0.0	1587.0	875.0	119.0	0	0
t	0	0	209.0	0.0	0.0	0.0	1587.0	0.0	1587.0	0.0	527.0	604.0	0	0
MA1620.1_rc_shift1 (Ptf1a(var.3)_rc) 
; local_words_6nt_m31 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=29/42; ncol2=12; w=11; offset=0; strand=R; shift=1; score=0.660759; -rmaCAGGTGtky-
; cor=; Ncor=
a	0	2811.0	2745.0	6633.0	142.0	10014.0	129.0	426.0	114.0	107.0	826.0	1599.0	2324.0	0
c	0	2183.0	3341.0	1516.0	9972.0	98.0	294.0	1182.0	84.0	113.0	1410.0	2379.0	2664.0	0
g	0	3004.0	2527.0	1615.0	109.0	94.0	9612.0	8567.0	60.0	9887.0	1188.0	3700.0	2469.0	0
t	0	2293.0	1678.0	527.0	68.0	85.0	256.0	116.0	10033.0	184.0	6867.0	2613.0	2834.0	0
MA0623.2_shift2 (NEUROG1) 
; local_words_6nt_m31 versus MA0623.2 (NEUROG1); m=30/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.656493; --raCATATGky--
; cor=; Ncor=
a	0	0	1658.0	1898.0	0.0	3518.0	4.0	3518.0	0.0	0.0	23.0	68.0	0	0
c	0	0	118.0	876.0	3518.0	0.0	114.0	0.0	86.0	0.0	655.0	1844.0	0	0
g	0	0	1860.0	729.0	8.0	63.0	0.0	80.0	0.0	3518.0	907.0	187.0	0	0
t	0	0	33.0	14.0	0.0	0.0	3518.0	0.0	3518.0	0.0	1933.0	1673.0	0	0
MA1559.1_shift2 (SNAI3) 
; local_words_6nt_m31 versus MA1559.1 (SNAI3); m=31/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.655425; --arCAGGTGya--
; cor=; Ncor=
a	0	0	2952.0	3917.0	23.0	6248.0	118.0	0.0	0.0	94.0	432.0	4680.0	0	0
c	0	0	661.0	0.0	6248.0	0.0	29.0	18.0	12.0	0.0	6248.0	688.0	0	0
g	0	0	1525.0	2331.0	0.0	34.0	6248.0	6248.0	28.0	6248.0	1701.0	1569.0	0	0
t	0	0	1110.0	183.0	35.0	3.0	43.0	0.0	6248.0	30.0	3161.0	553.0	0	0
MA0830.2_rc_shift0 (TCF4_rc) 
; local_words_6nt_m31 versus MA0830.2_rc (TCF4_rc); m=32/42; ncol2=13; w=11; offset=-1; strand=R; shift=0; score=0.652411; ssggCAGGTGccg-
; cor=; Ncor=
a	6827.0	6430.0	6126.0	3555.0	242.0	27398.0	188.0	751.0	512.0	215.0	1737.0	7059.0	6225.0	0
c	7662.0	7964.0	4933.0	5281.0	28432.0	679.0	1197.0	1733.0	1295.0	321.0	18498.0	8618.0	7140.0	0
g	9843.0	8658.0	12872.0	18935.0	540.0	1016.0	27724.0	26765.0	635.0	28686.0	5062.0	6754.0	10052.0	0
t	5133.0	6413.0	5534.0	1694.0	251.0	372.0	356.0	216.0	27023.0	243.0	4168.0	7034.0	6048.0	0
MA1641.1_shift1 (MYF5) 
; local_words_6nt_m31 versus MA1641.1 (MYF5); m=33/42; ncol2=12; w=11; offset=0; strand=D; shift=1; score=0.648859; -gvaCAGCTGtbc-
; cor=; Ncor=
a	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0	0
c	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0	0
g	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0	0
t	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0	0
MA1467.1_shift2 (ATOH1(var.2)) 
; local_words_6nt_m31 versus MA1467.1 (ATOH1(var.2)); m=34/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.646381; --AACAGCTGTY--
; cor=; Ncor=
a	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0
c	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0
g	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0
t	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0
MA0633.1_rc_shift2 (Twist2_rc) 
; local_words_6nt_m31 versus MA0633.1_rc (Twist2_rc); m=35/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.645969; --mACATATGky--
; cor=; Ncor=
a	0	0	365.0	745.0	0.0	1000.0	0.0	783.0	0.0	0.0	69.0	200.0	0	0
c	0	0	272.0	155.0	1000.0	0.0	211.0	0.0	0.0	0.0	69.0	298.0	0	0
g	0	0	181.0	50.0	0.0	0.0	0.0	217.0	0.0	1000.0	580.0	200.0	0	0
t	0	0	181.0	50.0	0.0	0.0	789.0	0.0	1000.0	0.0	282.0	302.0	0	0
MA0669.1_shift2 (NEUROG2) 
; local_words_6nt_m31 versus MA0669.1 (NEUROG2); m=36/42; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.644552; --raCATATGtY--
; cor=; Ncor=
a	0	0	246.0	426.0	1.0	426.0	4.0	426.0	5.0	0.0	3.0	0.0	0	0
c	0	0	2.0	150.0	426.0	0.0	5.0	8.0	3.0	0.0	170.0	307.0	0	0
g	0	0	180.0	65.0	0.0	3.0	20.0	5.0	0.0	426.0	147.0	0.0	0	0
t	0	0	0.0	0.0	5.0	0.0	426.0	0.0	426.0	0.0	426.0	119.0	0	0
MA0827.1_rc_shift2 (OLIG3_rc) 
; local_words_6nt_m31 versus MA0827.1_rc (OLIG3_rc); m=37/42; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.643862; --rvCATATGkT--
; cor=; Ncor=
a	0	0	1915.0	1010.0	275.0	1915.0	0.0	1915.0	22.0	3.0	6.0	132.0	0	0
c	0	0	176.0	904.0	1915.0	2.0	11.0	72.0	99.0	0.0	208.0	427.0	0	0
g	0	0	964.0	662.0	4.0	224.0	103.0	26.0	10.0	1915.0	1115.0	204.0	0	0
t	0	0	265.0	28.0	4.0	56.0	1915.0	0.0	1915.0	222.0	800.0	1915.0	0	0
MA0091.1_rc_shift2 (TAL1::TCF3_rc) 
; local_words_6nt_m31 versus MA0091.1_rc (TAL1::TCF3_rc); m=38/42; ncol2=12; w=10; offset=1; strand=R; shift=2; score=0.621096; --AmCAKMTGkTck
; cor=; Ncor=
a	0	0	34.0	21.0	1.0	44.0	0.0	32.0	0.0	0.0	0.0	2.0	5.0	9.0
c	0	0	2.0	20.0	43.0	0.0	0.0	11.0	0.0	1.0	0.0	3.0	20.0	8.0
g	0	0	4.0	3.0	0.0	0.0	32.0	1.0	0.0	43.0	24.0	0.0	10.0	14.0
t	0	0	4.0	0.0	0.0	0.0	12.0	0.0	44.0	0.0	20.0	39.0	9.0	13.0
MA0499.2_rc_shift0 (MYOD1_rc) 
; local_words_6nt_m31 versus MA0499.2_rc (MYOD1_rc); m=39/42; ncol2=13; w=11; offset=-1; strand=R; shift=0; score=0.596487; rkrACAGGTGcwg-
; cor=; Ncor=
a	9358.0	8151.0	9000.0	29644.0	238.0	33130.0	330.0	1226.0	587.0	269.0	2245.0	9291.0	7728.0	0
c	7495.0	6202.0	4440.0	1699.0	33468.0	366.0	932.0	7336.0	849.0	354.0	21884.0	8444.0	8118.0	0
g	11760.0	10485.0	19052.0	2555.0	386.0	563.0	32504.0	25275.0	583.0	33328.0	5622.0	7103.0	11279.0	0
t	5687.0	9462.0	1808.0	402.0	208.0	241.0	534.0	463.0	32281.0	349.0	4549.0	9462.0	7175.0	0
MA0607.1_rc_shift3 (Bhlha15_rc) 
; local_words_6nt_m31 versus MA0607.1_rc (Bhlha15_rc); m=40/42; ncol2=8; w=8; offset=2; strand=R; shift=3; score=0.577362; ---aCATATGs---
; cor=; Ncor=
a	0	0	0	614.0	0.0	999.0	0.0	799.0	0.0	0.0	1.0	0	0	0
c	0	0	0	154.0	999.0	0.0	0.0	200.0	0.0	0.0	286.0	0	0	0
g	0	0	0	231.0	0.0	0.0	200.0	0.0	0.0	999.0	571.0	0	0	0
t	0	0	0	1.0	0.0	0.0	799.0	0.0	999.0	0.0	143.0	0	0	0
MA1621.1_rc_shift0 (Rbpjl_rc) 
; local_words_6nt_m31 versus MA1621.1_rc (Rbpjl_rc); m=41/42; ncol2=14; w=11; offset=-1; strand=R; shift=0; score=0.566943; grsaCAGGTGtkbs
; cor=; Ncor=
a	2286.0	2537.0	2179.0	5784.0	124.0	9313.0	96.0	363.0	86.0	137.0	782.0	1364.0	2210.0	2289.0
c	2281.0	1958.0	2687.0	1581.0	9295.0	132.0	317.0	672.0	110.0	103.0	1492.0	1802.0	2549.0	2476.0
g	3003.0	2884.0	3247.0	1718.0	131.0	144.0	9005.0	8533.0	70.0	9273.0	1373.0	3117.0	2427.0	2881.0
t	2082.0	2273.0	1539.0	569.0	102.0	63.0	234.0	84.0	9386.0	139.0	6005.0	3369.0	2466.0	2006.0
MA1485.1_rc_shift0 (FERD3L_rc) 
; local_words_6nt_m31 versus MA1485.1_rc (FERD3L_rc); m=42/42; ncol2=14; w=11; offset=-1; strand=R; shift=0; score=0.558659; GTrACAGCTGkyrC
; cor=; Ncor=
a	48.0	958.0	14919.0	21065.0	0.0	29605.0	0.0	4691.0	144.0	0.0	1710.0	74.0	9557.0	225.0
c	0.0	9815.0	5920.0	3395.0	29605.0	210.0	471.0	29605.0	118.0	0.0	3142.0	12703.0	348.0	29605.0
g	29605.0	809.0	8664.0	3878.0	0.0	129.0	29605.0	841.0	126.0	29605.0	9363.0	2443.0	20049.0	68.0
t	0.0	29605.0	103.0	1268.0	0.0	81.0	3649.0	0.0	29605.0	36.0	15390.0	14384.0	450.0	2158.0