Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m33/peak-motifs_local_words_6nt_m33.tf
		file1	1	24	36
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_6nt_m33 MA0499.2 local_words_6nt_m33local_words_6nt_m33 MYOD1 0.829 0.449 24 13 13 24 0.5417 0.5417 1.0000 D 11
local_words_6nt_m33 MA1485.1 local_words_6nt_m33local_words_6nt_m33 FERD3L 0.723 0.422 24 14 14 24 0.5833 0.5833 1.0000 D 10
local_words_6nt_m33 MA0500.2 local_words_6nt_m33local_words_6nt_m33 MYOG 0.837 0.419 24 12 12 24 0.5000 0.5000 1.0000 D 11
local_words_6nt_m33 MA0521.1 local_words_6nt_m33local_words_6nt_m33 Tcf12 0.883 0.405 24 11 11 24 0.4583 0.4583 1.0000 R 11
local_words_6nt_m33 MA0745.2 local_words_6nt_m33local_words_6nt_m33 SNAI2 0.747 0.405 24 13 13 24 0.5417 0.5417 1.0000 D 11
local_words_6nt_m33 MA1641.1 local_words_6nt_m33local_words_6nt_m33 MYF5 0.803 0.402 24 12 12 24 0.5000 0.5000 1.0000 R 11
local_words_6nt_m33 MA1619.1 local_words_6nt_m33local_words_6nt_m33 Ptf1a(var.2) 0.801 0.401 24 12 12 24 0.5000 0.5000 1.0000 R 11 
 Host name	pedagogix
 Job started	2020-04-14.153408
 Job done	2020-04-14.153422
 Seconds	2.84
	user	2.84
	system	0.2
	cuser	10.01
;	csystem	0.43