One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m39/peak-motifs_local_words_6nt_m39.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m39/peak-motifs_local_words_6nt_m39_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m39_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m39_shift1 (local_words_6nt_m39local_words_6nt_m39)
; local_words_6nt_m39 (local_words_6nt_m39local_words_6nt_m39); m=0 (reference); ncol1=24; shift=1; ncol=25; -sdgcAACAGGTGCAGCTGTCacmr ; Alignment reference a 0 11 12 7 5 37 33 1 42 2 1 3 1 0 45 1 1 0 0 1 0 31 1 15 18 c 0 16 6 9 32 5 4 40 1 2 10 1 5 46 1 0 46 1 0 4 41 8 31 16 8 g 0 13 17 25 8 4 10 3 1 44 36 6 42 0 1 45 1 0 48 4 4 6 8 11 14 t 0 8 13 7 3 2 1 4 4 0 1 38 0 2 1 2 0 47 0 39 3 3 8 6 8

MA0744.2_shift0 (SCRT2)
; local_words_6nt_m39 versus MA0744.2 (SCRT2); m=1/8; ncol2=16; w=15; offset=-1; strand=D; shift=0; score=0.444583; rrwkCAACAGGTggtw--------- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 0 0 0 0 0 0 0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 0 0 0 0 0 0 0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 0 0 0 0 0 0 0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0 0 0 0 0 0 0 0 0

MA1485.1_shift9 (FERD3L)
; local_words_6nt_m39 versus MA1485.1 (FERD3L); m=2/8; ncol2=14; w=14; offset=8; strand=D; shift=9; score=0.44051; ---------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0499.2_shift10 (MYOD1)
; local_words_6nt_m39 versus MA0499.2 (MYOD1); m=3/8; ncol2=13; w=13; offset=9; strand=D; shift=10; score=0.437851; ----------cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0743.2_shift0 (SCRT1)
; local_words_6nt_m39 versus MA0743.2 (SCRT1); m=4/8; ncol2=16; w=15; offset=-1; strand=D; shift=0; score=0.430703; wawkCAACAGGTGgtw--------- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 0 0 0 0 0 0 0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 0 0 0 0 0 0 0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 0 0 0 0 0 0 0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0 0 0 0 0 0 0 0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; local_words_6nt_m39 versus MA0745.2_rc (SNAI2_rc); m=5/8; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.420492; ---rykACAGGTGcrt--------- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 0 0 0 0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 0 0 0 0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 0 0 0 0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0 0 0 0 0 0 0

MA0500.2_rc_shift10 (MYOG_rc)
; local_words_6nt_m39 versus MA0500.2_rc (MYOG_rc); m=6/8; ncol2=12; w=12; offset=9; strand=R; shift=10; score=0.404429; ----------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0830.2_rc_shift3 (TCF4_rc)
; local_words_6nt_m39 versus MA0830.2_rc (TCF4_rc); m=7/8; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.402725; ---ssggCAGGTGccg--------- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 0 0 0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 0 0 0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0 0 0 0 0 0

MA0521.1_rc_shift10 (Tcf12_rc)
; local_words_6nt_m39 versus MA0521.1_rc (Tcf12_rc); m=8/8; ncol2=11; w=11; offset=9; strand=R; shift=10; score=0.401305; ----------cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m39_shift1 (local_words_6nt_m39local_words_6nt_m39)				; local_words_6nt_m39 (local_words_6nt_m39local_words_6nt_m39); m=0 (reference); ncol1=24; shift=1; ncol=25; -sdgcAACAGGTGCAGCTGTCacmr ; Alignment reference a 0 11 12 7 5 37 33 1 42 2 1 3 1 0 45 1 1 0 0 1 0 31 1 15 18 c 0 16 6 9 32 5 4 40 1 2 10 1 5 46 1 0 46 1 0 4 41 8 31 16 8 g 0 13 17 25 8 4 10 3 1 44 36 6 42 0 1 45 1 0 48 4 4 6 8 11 14 t 0 8 13 7 3 2 1 4 4 0 1 38 0 2 1 2 0 47 0 39 3 3 8 6 8
MA0744.2_shift0 (SCRT2)				; local_words_6nt_m39 versus MA0744.2 (SCRT2); m=1/8; ncol2=16; w=15; offset=-1; strand=D; shift=0; score=0.444583; rrwkCAACAGGTggtw--------- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 0 0 0 0 0 0 0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 0 0 0 0 0 0 0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 0 0 0 0 0 0 0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0 0 0 0 0 0 0 0 0
MA1485.1_shift9 (FERD3L)				; local_words_6nt_m39 versus MA1485.1 (FERD3L); m=2/8; ncol2=14; w=14; offset=8; strand=D; shift=9; score=0.44051; ---------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0
MA0499.2_shift10 (MYOD1)				; local_words_6nt_m39 versus MA0499.2 (MYOD1); m=3/8; ncol2=13; w=13; offset=9; strand=D; shift=10; score=0.437851; ----------cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0
MA0743.2_shift0 (SCRT1)				; local_words_6nt_m39 versus MA0743.2 (SCRT1); m=4/8; ncol2=16; w=15; offset=-1; strand=D; shift=0; score=0.430703; wawkCAACAGGTGgtw--------- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 0 0 0 0 0 0 0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 0 0 0 0 0 0 0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 0 0 0 0 0 0 0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0 0 0 0 0 0 0 0 0
MA0745.2_rc_shift3 (SNAI2_rc)				; local_words_6nt_m39 versus MA0745.2_rc (SNAI2_rc); m=5/8; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.420492; ---rykACAGGTGcrt--------- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 0 0 0 0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 0 0 0 0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 0 0 0 0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0 0 0 0 0 0 0
MA0500.2_rc_shift10 (MYOG_rc)				; local_words_6nt_m39 versus MA0500.2_rc (MYOG_rc); m=6/8; ncol2=12; w=12; offset=9; strand=R; shift=10; score=0.404429; ----------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
MA0830.2_rc_shift3 (TCF4_rc)				; local_words_6nt_m39 versus MA0830.2_rc (TCF4_rc); m=7/8; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.402725; ---ssggCAGGTGccg--------- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 0 0 0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 0 0 0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0 0 0 0 0 0
MA0521.1_rc_shift10 (Tcf12_rc)				; local_words_6nt_m39 versus MA0521.1_rc (Tcf12_rc); m=8/8; ncol2=11; w=11; offset=9; strand=R; shift=10; score=0.401305; ----------cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0