Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43.tf
		file1	1	24	37
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_6nt_m43 MA1485.1 local_words_6nt_m43local_words_6nt_m43 FERD3L 0.872 0.509 24 14 14 24 0.5833 0.5833 1.0000 D 2
local_words_6nt_m43 MA0832.1 local_words_6nt_m43local_words_6nt_m43 Tcf21 0.800 0.466 24 14 14 24 0.5833 0.5833 1.0000 R 2
local_words_6nt_m43 MA1641.1 local_words_6nt_m43local_words_6nt_m43 MYF5 0.887 0.444 24 12 12 24 0.5000 0.5000 1.0000 D 3
local_words_6nt_m43 MA1619.1 local_words_6nt_m43local_words_6nt_m43 Ptf1a(var.2) 0.871 0.435 24 12 12 24 0.5000 0.5000 1.0000 R 3
local_words_6nt_m43 MA1621.1 local_words_6nt_m43local_words_6nt_m43 Rbpjl 0.728 0.425 24 14 14 24 0.5833 0.5833 1.0000 D 2
local_words_6nt_m43 MA0796.1 local_words_6nt_m43local_words_6nt_m43 TGIF1 0.829 0.415 24 12 12 24 0.5000 0.5000 1.0000 R 3
local_words_6nt_m43 MA0499.2 local_words_6nt_m43local_words_6nt_m43 MYOD1 0.759 0.411 24 13 13 24 0.5417 0.5417 1.0000 D 3
local_words_6nt_m43 MA0500.2 local_words_6nt_m43local_words_6nt_m43 MYOG 0.818 0.409 24 12 12 24 0.5000 0.5000 1.0000 R 3
local_words_6nt_m43 MA1571.1 local_words_6nt_m43local_words_6nt_m43 TGIF2LX 0.817 0.409 24 12 12 24 0.5000 0.5000 1.0000 D 3
local_words_6nt_m43 MA1467.1 local_words_6nt_m43local_words_6nt_m43 ATOH1(var.2) 0.979 0.408 24 10 10 24 0.4167 0.4167 1.0000 D 4
local_words_6nt_m43 MA1618.1 local_words_6nt_m43local_words_6nt_m43 Ptf1a 0.751 0.407 24 13 13 24 0.5417 0.5417 1.0000 R 2
local_words_6nt_m43 MA0797.1 local_words_6nt_m43local_words_6nt_m43 TGIF2 0.810 0.405 24 12 12 24 0.5000 0.5000 1.0000 R 3
local_words_6nt_m43 MA0521.1 local_words_6nt_m43local_words_6nt_m43 Tcf12 0.880 0.403 24 11 11 24 0.4583 0.4583 1.0000 R 3
local_words_6nt_m43 MA1572.1 local_words_6nt_m43local_words_6nt_m43 TGIF2LY 0.801 0.400 24 12 12 24 0.5000 0.5000 1.0000 D 3 
 Host name	pedagogix
 Job started	2020-04-14.153602
 Job done	2020-04-14.153622
 Seconds	3.84
	user	3.84
	system	0.4
	cuser	14.96
;	csystem	0.91