One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m43/peak-motifs_local_words_6nt_m43_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m43_shift0 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m43_shift0 (local_words_6nt_m43local_words_6nt_m43)
; local_words_6nt_m43 (local_words_6nt_m43local_words_6nt_m43); m=0 (reference); ncol1=24; shift=0; ncol=24; ytggaaCAGCTGTCACAGCAGCtr ; Alignment reference a 5 9 7 4 21 25 0 34 0 1 1 0 3 1 34 1 32 4 4 32 3 1 9 11 c 10 8 6 6 8 2 37 0 2 34 0 0 1 28 2 31 1 0 28 1 1 34 8 3 g 9 9 20 24 7 8 0 1 34 1 0 37 2 5 1 3 0 32 3 3 32 1 4 18 t 13 11 4 3 1 2 0 2 1 1 36 0 31 3 0 2 4 1 2 1 1 1 16 5

MA1485.1_shift2 (FERD3L)
; local_words_6nt_m43 versus MA1485.1 (FERD3L); m=1/14; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.508937; --GyrmCAGCTGTyAC-------- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 0 0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 0 0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 0 0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0 0 0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_6nt_m43 versus MA0832.1_rc (Tcf21_rc); m=2/14; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.466414; --ryAACAGCTGTTry-------- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_6nt_m43 versus MA1641.1 (MYF5); m=3/14; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.443737; ---gvaCAGCTGtbc--------- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_6nt_m43 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/14; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.435447; ---rmaCAGCTGtky--------- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0 0 0

MA1621.1_shift2 (Rbpjl)
; local_words_6nt_m43 versus MA1621.1 (Rbpjl); m=5/14; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.424549; --svmaCACCTGtsyc-------- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0 0 0 0

MA0796.1_rc_shift3 (TGIF1_rc)
; local_words_6nt_m43 versus MA0796.1_rc (TGIF1_rc); m=6/14; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.414724; ---TGACAGCTGTCA--------- ; cor=; Ncor= a 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 0 0 0 c 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 0 0 0 g 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 0 0 0 t 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0 0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_6nt_m43 versus MA0499.2 (MYOD1); m=7/14; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.41089; ---cwgCACCTGTymy-------- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0 0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_6nt_m43 versus MA0500.2_rc (MYOG_rc); m=8/14; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.409056; ---sarCAGCTGyts--------- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0 0 0 0

MA1571.1_shift3 (TGIF2LX)
; local_words_6nt_m43 versus MA1571.1 (TGIF2LX); m=9/14; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.408522; ---TGACAgcTGTCA--------- ; cor=; Ncor= a 0 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 0 0 0 0 c 0 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 0 0 0 0 g 0 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 0 0 0 0 t 0 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_6nt_m43 versus MA1467.1 (ATOH1(var.2)); m=10/14; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.407957; ----AACAGCTGTY---------- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0 0 0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; local_words_6nt_m43 versus MA1618.1_rc (Ptf1a_rc); m=11/14; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.406596; --dmaaCATCTGtkh--------- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 0 0 0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 0 0 0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 0 0 0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0 0 0 0 0 0

MA0797.1_rc_shift3 (TGIF2_rc)
; local_words_6nt_m43 versus MA0797.1_rc (TGIF2_rc); m=12/14; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.405164; ---TGACAsCTGTCA--------- ; cor=; Ncor= a 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 0 0 0 0 c 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 0 0 0 0 g 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 0 0 0 0 t 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0 0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_6nt_m43 versus MA0521.1_rc (Tcf12_rc); m=13/14; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.403391; ---cwsCAGCTGYy---------- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0 0 0

MA1572.1_shift3 (TGIF2LY)
; local_words_6nt_m43 versus MA1572.1 (TGIF2LY); m=14/14; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.40041; ---TGACAgcTGTCA--------- ; cor=; Ncor= a 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 0 0 0 c 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 0 0 0 g 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m43_shift0 (local_words_6nt_m43local_words_6nt_m43)				; local_words_6nt_m43 (local_words_6nt_m43local_words_6nt_m43); m=0 (reference); ncol1=24; shift=0; ncol=24; ytggaaCAGCTGTCACAGCAGCtr ; Alignment reference a 5 9 7 4 21 25 0 34 0 1 1 0 3 1 34 1 32 4 4 32 3 1 9 11 c 10 8 6 6 8 2 37 0 2 34 0 0 1 28 2 31 1 0 28 1 1 34 8 3 g 9 9 20 24 7 8 0 1 34 1 0 37 2 5 1 3 0 32 3 3 32 1 4 18 t 13 11 4 3 1 2 0 2 1 1 36 0 31 3 0 2 4 1 2 1 1 1 16 5
MA1485.1_shift2 (FERD3L)				; local_words_6nt_m43 versus MA1485.1 (FERD3L); m=1/14; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.508937; --GyrmCAGCTGTyAC-------- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 0 0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 0 0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 0 0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0 0 0 0 0
MA0832.1_rc_shift2 (Tcf21_rc)				; local_words_6nt_m43 versus MA0832.1_rc (Tcf21_rc); m=2/14; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.466414; --ryAACAGCTGTTry-------- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0 0 0
MA1641.1_shift3 (MYF5)				; local_words_6nt_m43 versus MA1641.1 (MYF5); m=3/14; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.443737; ---gvaCAGCTGtbc--------- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0 0 0
MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)				; local_words_6nt_m43 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/14; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.435447; ---rmaCAGCTGtky--------- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0 0 0
MA1621.1_shift2 (Rbpjl)				; local_words_6nt_m43 versus MA1621.1 (Rbpjl); m=5/14; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.424549; --svmaCACCTGtsyc-------- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0 0 0 0
MA0796.1_rc_shift3 (TGIF1_rc)				; local_words_6nt_m43 versus MA0796.1_rc (TGIF1_rc); m=6/14; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.414724; ---TGACAGCTGTCA--------- ; cor=; Ncor= a 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 0 0 0 c 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 0 0 0 g 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 0 0 0 t 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0 0 0 0
MA0499.2_shift3 (MYOD1)				; local_words_6nt_m43 versus MA0499.2 (MYOD1); m=7/14; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.41089; ---cwgCACCTGTymy-------- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0 0 0 0
MA0500.2_rc_shift3 (MYOG_rc)				; local_words_6nt_m43 versus MA0500.2_rc (MYOG_rc); m=8/14; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.409056; ---sarCAGCTGyts--------- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0 0 0 0
MA1571.1_shift3 (TGIF2LX)				; local_words_6nt_m43 versus MA1571.1 (TGIF2LX); m=9/14; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.408522; ---TGACAgcTGTCA--------- ; cor=; Ncor= a 0 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 0 0 0 0 c 0 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 0 0 0 0 g 0 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 0 0 0 0 t 0 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0 0 0 0 0
MA1467.1_shift4 (ATOH1(var.2))				; local_words_6nt_m43 versus MA1467.1 (ATOH1(var.2)); m=10/14; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.407957; ----AACAGCTGTY---------- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0 0 0 0
MA1618.1_rc_shift2 (Ptf1a_rc)				; local_words_6nt_m43 versus MA1618.1_rc (Ptf1a_rc); m=11/14; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.406596; --dmaaCATCTGtkh--------- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 0 0 0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 0 0 0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 0 0 0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0 0 0 0 0 0
MA0797.1_rc_shift3 (TGIF2_rc)				; local_words_6nt_m43 versus MA0797.1_rc (TGIF2_rc); m=12/14; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.405164; ---TGACAsCTGTCA--------- ; cor=; Ncor= a 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 0 0 0 0 c 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 0 0 0 0 g 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 0 0 0 0 t 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0 0 0 0 0
MA0521.1_rc_shift3 (Tcf12_rc)				; local_words_6nt_m43 versus MA0521.1_rc (Tcf12_rc); m=13/14; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.403391; ---cwsCAGCTGYy---------- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0 0 0
MA1572.1_shift3 (TGIF2LY)				; local_words_6nt_m43 versus MA1572.1 (TGIF2LY); m=14/14; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.40041; ---TGACAgcTGTCA--------- ; cor=; Ncor= a 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 0 0 0 c 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 0 0 0 g 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0 0 0 0