One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m45/peak-motifs_local_words_6nt_m45.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_6nt_m45/peak-motifs_local_words_6nt_m45_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_6nt_m45_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m45_shift0 (local_words_6nt_m45local_words_6nt_m45)
; local_words_6nt_m45 (local_words_6nt_m45local_words_6nt_m45); m=0 (reference); ncol1=24; shift=0; ncol=24; cwGCTGCTGTGCCAGCTGTCACys ; Alignment reference a 4 12 3 1 5 0 2 5 3 2 1 4 0 32 0 1 1 1 6 0 26 1 5 8 c 21 4 0 33 0 1 30 3 2 4 4 26 35 2 7 33 0 0 3 34 5 24 13 9 g 6 6 31 0 1 34 2 2 27 2 24 1 0 0 27 1 1 34 0 0 1 8 4 12 t 4 13 1 1 29 0 1 25 3 27 6 4 0 1 1 0 33 0 26 1 3 2 13 6

MA1485.1_shift8 (FERD3L)
; local_words_6nt_m45 versus MA1485.1 (FERD3L); m=1/8; ncol2=14; w=14; offset=8; strand=D; shift=8; score=0.484672; --------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0796.1_rc_shift9 (TGIF1_rc)
; local_words_6nt_m45 versus MA0796.1_rc (TGIF1_rc); m=2/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.445409; ---------TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 c 0 0 0 0 0 0 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 g 0 0 0 0 0 0 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 t 0 0 0 0 0 0 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0

MA0797.1_rc_shift9 (TGIF2_rc)
; local_words_6nt_m45 versus MA0797.1_rc (TGIF2_rc); m=3/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.442485; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 c 0 0 0 0 0 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 g 0 0 0 0 0 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 t 0 0 0 0 0 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0

MA1571.1_rc_shift9 (TGIF2LX_rc)
; local_words_6nt_m45 versus MA1571.1_rc (TGIF2LX_rc); m=4/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.442455; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 c 0 0 0 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 g 0 0 0 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0

MA1572.1_shift9 (TGIF2LY)
; local_words_6nt_m45 versus MA1572.1 (TGIF2LY); m=5/8; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.437785; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 c 0 0 0 0 0 0 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 g 0 0 0 0 0 0 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 t 0 0 0 0 0 0 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0

MA0783.1_rc_shift9 (PKNOX2_rc)
; local_words_6nt_m45 versus MA0783.1_rc (PKNOX2_rc); m=6/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.430076; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 c 0 0 0 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 t 0 0 0 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0

MA0499.2_shift9 (MYOD1)
; local_words_6nt_m45 versus MA0499.2 (MYOD1); m=7/8; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.409919; ---------cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1109.1_rc_shift8 (NEUROD1_rc)
; local_words_6nt_m45 versus MA1109.1_rc (NEUROD1_rc); m=8/8; ncol2=13; w=13; offset=8; strand=R; shift=8; score=0.400788; --------syrCCATCTGtyc--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 c 0 0 0 0 0 0 0 0 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 g 0 0 0 0 0 0 0 0 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 t 0 0 0 0 0 0 0 0 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m45_shift0 (local_words_6nt_m45local_words_6nt_m45)				; local_words_6nt_m45 (local_words_6nt_m45local_words_6nt_m45); m=0 (reference); ncol1=24; shift=0; ncol=24; cwGCTGCTGTGCCAGCTGTCACys ; Alignment reference a 4 12 3 1 5 0 2 5 3 2 1 4 0 32 0 1 1 1 6 0 26 1 5 8 c 21 4 0 33 0 1 30 3 2 4 4 26 35 2 7 33 0 0 3 34 5 24 13 9 g 6 6 31 0 1 34 2 2 27 2 24 1 0 0 27 1 1 34 0 0 1 8 4 12 t 4 13 1 1 29 0 1 25 3 27 6 4 0 1 1 0 33 0 26 1 3 2 13 6
MA1485.1_shift8 (FERD3L)				; local_words_6nt_m45 versus MA1485.1 (FERD3L); m=1/8; ncol2=14; w=14; offset=8; strand=D; shift=8; score=0.484672; --------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0
MA0796.1_rc_shift9 (TGIF1_rc)				; local_words_6nt_m45 versus MA0796.1_rc (TGIF1_rc); m=2/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.445409; ---------TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 c 0 0 0 0 0 0 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 g 0 0 0 0 0 0 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 t 0 0 0 0 0 0 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0
MA0797.1_rc_shift9 (TGIF2_rc)				; local_words_6nt_m45 versus MA0797.1_rc (TGIF2_rc); m=3/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.442485; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 c 0 0 0 0 0 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 g 0 0 0 0 0 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 t 0 0 0 0 0 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0
MA1571.1_rc_shift9 (TGIF2LX_rc)				; local_words_6nt_m45 versus MA1571.1_rc (TGIF2LX_rc); m=4/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.442455; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 c 0 0 0 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 g 0 0 0 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0
MA1572.1_shift9 (TGIF2LY)				; local_words_6nt_m45 versus MA1572.1 (TGIF2LY); m=5/8; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.437785; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 c 0 0 0 0 0 0 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 g 0 0 0 0 0 0 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 t 0 0 0 0 0 0 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0
MA0783.1_rc_shift9 (PKNOX2_rc)				; local_words_6nt_m45 versus MA0783.1_rc (PKNOX2_rc); m=6/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.430076; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 c 0 0 0 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 t 0 0 0 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0
MA0499.2_shift9 (MYOD1)				; local_words_6nt_m45 versus MA0499.2 (MYOD1); m=7/8; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.409919; ---------cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0
MA1109.1_rc_shift8 (NEUROD1_rc)				; local_words_6nt_m45 versus MA1109.1_rc (NEUROD1_rc); m=8/8; ncol2=13; w=13; offset=8; strand=R; shift=8; score=0.400788; --------syrCCATCTGtyc--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 c 0 0 0 0 0 0 0 0 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 g 0 0 0 0 0 0 0 0 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 t 0 0 0 0 0 0 0 0 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0