One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m22/peak-motifs_local_words_7nt_m22.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m22/peak-motifs_local_words_7nt_m22_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m22_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m22_shift0 (local_words_7nt_m22local_words_7nt_m22)
; local_words_7nt_m22 (local_words_7nt_m22local_words_7nt_m22); m=0 (reference); ncol1=22; shift=0; ncol=22; wgGTGACAGCTGCACCTGTChs ; Alignment reference a 36 23 9 9 6 105 2 120 2 3 6 3 1 102 7 7 8 4 4 7 43 26 c 32 29 26 8 5 11 132 2 2 129 1 1 118 12 97 110 3 9 21 99 35 36 g 29 51 95 12 122 10 2 2 128 2 2 128 12 7 25 9 2 112 15 15 16 43 t 39 33 6 107 3 10 0 12 4 2 127 4 5 15 7 10 123 11 96 15 42 31

MA0499.2_shift9 (MYOD1)
; local_words_7nt_m22 versus MA0499.2 (MYOD1); m=1/10; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.501194; ---------cwgCACCTGTymy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0

MA0745.2_shift9 (SNAI2)
; local_words_7nt_m22 versus MA0745.2 (SNAI2); m=2/10; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.479874; ---------aygCACCTGTmry ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 c 0 0 0 0 0 0 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 g 0 0 0 0 0 0 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 t 0 0 0 0 0 0 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m22 versus MA1485.1_rc (FERD3L_rc); m=3/10; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.479658; --GTrACAGCTGkyrC------ ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0

MA0830.2_shift9 (TCF4)
; local_words_7nt_m22 versus MA0830.2 (TCF4); m=4/10; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.454215; ---------cggCACCTGccss ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 0 0 0 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 0 0 0 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 0 0 0 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0

MA1631.1_shift9 (ASCL1(var.2))
; local_words_7nt_m22 versus MA1631.1 (ASCL1(var.2)); m=5/10; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.439813; ---------cdgCACCTGCysc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 0 0 0 0 0 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 0 0 0 0 0 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 0 0 0 0 0 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m22 versus MA0521.1 (Tcf12); m=6/10; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.434833; ----rRCAGCTGswg------- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0 0 0

MA0500.2_shift3 (MYOG)
; local_words_7nt_m22 versus MA0500.2 (MYOG); m=7/10; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.432692; ---sarCAGCTGyts------- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_7nt_m22 versus MA1641.1 (MYF5); m=8/10; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.418145; ---gvaCAGCTGtbc------- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_7nt_m22 versus MA1619.1 (Ptf1a(var.2)); m=9/10; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.416362; ---rmaCAGCTGtky------- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA1559.1_rc_shift10 (SNAI3_rc)
; local_words_7nt_m22 versus MA1559.1_rc (SNAI3_rc); m=10/10; ncol2=10; w=10; offset=10; strand=R; shift=10; score=0.400578; ----------trCACCTGyt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 c 0 0 0 0 0 0 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 g 0 0 0 0 0 0 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 t 0 0 0 0 0 0 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m22_shift0 (local_words_7nt_m22local_words_7nt_m22)				; local_words_7nt_m22 (local_words_7nt_m22local_words_7nt_m22); m=0 (reference); ncol1=22; shift=0; ncol=22; wgGTGACAGCTGCACCTGTChs ; Alignment reference a 36 23 9 9 6 105 2 120 2 3 6 3 1 102 7 7 8 4 4 7 43 26 c 32 29 26 8 5 11 132 2 2 129 1 1 118 12 97 110 3 9 21 99 35 36 g 29 51 95 12 122 10 2 2 128 2 2 128 12 7 25 9 2 112 15 15 16 43 t 39 33 6 107 3 10 0 12 4 2 127 4 5 15 7 10 123 11 96 15 42 31
MA0499.2_shift9 (MYOD1)				; local_words_7nt_m22 versus MA0499.2 (MYOD1); m=1/10; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.501194; ---------cwgCACCTGTymy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0
MA0745.2_shift9 (SNAI2)				; local_words_7nt_m22 versus MA0745.2 (SNAI2); m=2/10; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.479874; ---------aygCACCTGTmry ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 c 0 0 0 0 0 0 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 g 0 0 0 0 0 0 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 t 0 0 0 0 0 0 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0
MA1485.1_rc_shift2 (FERD3L_rc)				; local_words_7nt_m22 versus MA1485.1_rc (FERD3L_rc); m=3/10; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.479658; --GTrACAGCTGkyrC------ ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0
MA0830.2_shift9 (TCF4)				; local_words_7nt_m22 versus MA0830.2 (TCF4); m=4/10; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.454215; ---------cggCACCTGccss ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 0 0 0 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 0 0 0 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 0 0 0 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0
MA1631.1_shift9 (ASCL1(var.2))				; local_words_7nt_m22 versus MA1631.1 (ASCL1(var.2)); m=5/10; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.439813; ---------cdgCACCTGCysc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 0 0 0 0 0 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 0 0 0 0 0 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 0 0 0 0 0 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0
MA0521.1_shift4 (Tcf12)				; local_words_7nt_m22 versus MA0521.1 (Tcf12); m=6/10; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.434833; ----rRCAGCTGswg------- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0 0 0
MA0500.2_shift3 (MYOG)				; local_words_7nt_m22 versus MA0500.2 (MYOG); m=7/10; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.432692; ---sarCAGCTGyts------- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0
MA1641.1_shift3 (MYF5)				; local_words_7nt_m22 versus MA1641.1 (MYF5); m=8/10; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.418145; ---gvaCAGCTGtbc------- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0
MA1619.1_shift3 (Ptf1a(var.2))				; local_words_7nt_m22 versus MA1619.1 (Ptf1a(var.2)); m=9/10; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.416362; ---rmaCAGCTGtky------- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0
MA1559.1_rc_shift10 (SNAI3_rc)				; local_words_7nt_m22 versus MA1559.1_rc (SNAI3_rc); m=10/10; ncol2=10; w=10; offset=10; strand=R; shift=10; score=0.400578; ----------trCACCTGyt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 c 0 0 0 0 0 0 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 g 0 0 0 0 0 0 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 t 0 0 0 0 0 0 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0