Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23.tf
		file1	1	13	5321
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_7nt_m23 MA0499.2 local_words_7nt_m23local_words_7nt_m23 MYOD1 0.872 0.872 13 13 13 13 1.0000 1.0000 1.0000 D 0
local_words_7nt_m23 MA1620.1 local_words_7nt_m23local_words_7nt_m23 Ptf1a(var.3) 0.944 0.872 13 12 12 13 0.9231 0.9231 1.0000 D 0
local_words_7nt_m23 MA0745.2 local_words_7nt_m23local_words_7nt_m23 SNAI2 0.868 0.868 13 13 13 13 1.0000 1.0000 1.0000 D 0
local_words_7nt_m23 MA1621.1 local_words_7nt_m23local_words_7nt_m23 Rbpjl 0.928 0.861 13 14 13 14 0.9286 1.0000 0.9286 D -1
local_words_7nt_m23 MA0832.1 local_words_7nt_m23local_words_7nt_m23 Tcf21 0.862 0.800 13 14 13 14 0.9286 1.0000 0.9286 R -1
local_words_7nt_m23 MA1641.1 local_words_7nt_m23local_words_7nt_m23 MYF5 0.862 0.796 13 12 12 13 0.9231 0.9231 1.0000 R 0
local_words_7nt_m23 MA1619.1 local_words_7nt_m23local_words_7nt_m23 Ptf1a(var.2) 0.853 0.788 13 12 12 13 0.9231 0.9231 1.0000 D 0
local_words_7nt_m23 MA0830.2 local_words_7nt_m23local_words_7nt_m23 TCF4 0.766 0.766 13 13 13 13 1.0000 1.0000 1.0000 D 0
local_words_7nt_m23 MA1631.1 local_words_7nt_m23local_words_7nt_m23 ASCL1(var.2) 0.757 0.757 13 13 13 13 1.0000 1.0000 1.0000 D 0
local_words_7nt_m23 MA1618.1 local_words_7nt_m23local_words_7nt_m23 Ptf1a 0.734 0.734 13 13 13 13 1.0000 1.0000 1.0000 D 0
local_words_7nt_m23 MA1105.2 local_words_7nt_m23local_words_7nt_m23 GRHL2 0.781 0.721 13 12 12 13 0.9231 0.9231 1.0000 R 1
local_words_7nt_m23 MA1485.1 local_words_7nt_m23local_words_7nt_m23 FERD3L 0.776 0.720 13 14 13 14 0.9286 1.0000 0.9286 R -1
local_words_7nt_m23 MA0500.2 local_words_7nt_m23local_words_7nt_m23 MYOG 0.779 0.720 13 12 12 13 0.9231 0.9231 1.0000 D 0
local_words_7nt_m23 MA1642.1 local_words_7nt_m23local_words_7nt_m23 NEUROG2(var.2) 0.718 0.718 13 13 13 13 1.0000 1.0000 1.0000 R 0
local_words_7nt_m23 MA0521.1 local_words_7nt_m23local_words_7nt_m23 Tcf12 0.844 0.714 13 11 11 13 0.8462 0.8462 1.0000 R 0
local_words_7nt_m23 MA1123.2 local_words_7nt_m23local_words_7nt_m23 TWIST1 0.706 0.706 13 13 13 13 1.0000 1.0000 1.0000 R 0
local_words_7nt_m23 MA0744.2 local_words_7nt_m23local_words_7nt_m23 SCRT2 0.859 0.698 13 16 13 16 0.8125 1.0000 0.8125 R 0
local_words_7nt_m23 MA0820.1 local_words_7nt_m23local_words_7nt_m23 FIGLA 0.907 0.697 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m23 MA0665.1 local_words_7nt_m23local_words_7nt_m23 MSC 0.904 0.695 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m23 MA0743.2 local_words_7nt_m23local_words_7nt_m23 SCRT1 0.855 0.695 13 16 13 16 0.8125 1.0000 0.8125 R 0
local_words_7nt_m23 MA0667.1 local_words_7nt_m23local_words_7nt_m23 MYF6 0.889 0.684 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m23 MA0103.3 local_words_7nt_m23local_words_7nt_m23 ZEB1 0.807 0.683 13 11 11 13 0.8462 0.8462 1.0000 D 1
local_words_7nt_m23 MA1559.1 local_words_7nt_m23local_words_7nt_m23 SNAI3 0.878 0.676 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA0783.1 local_words_7nt_m23local_words_7nt_m23 PKNOX2 0.731 0.675 13 12 12 13 0.9231 0.9231 1.0000 R 0
local_words_7nt_m23 MA1467.1 local_words_7nt_m23local_words_7nt_m23 ATOH1(var.2) 0.875 0.673 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA0091.1 local_words_7nt_m23local_words_7nt_m23 TAL1::TCF3 0.713 0.658 13 12 12 13 0.9231 0.9231 1.0000 R 1
local_words_7nt_m23 MA1472.1 local_words_7nt_m23local_words_7nt_m23 BHLHA15(var.2) 0.845 0.650 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA1558.1 local_words_7nt_m23local_words_7nt_m23 SNAI1 0.843 0.648 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA0797.1 local_words_7nt_m23local_words_7nt_m23 TGIF2 0.701 0.647 13 12 12 13 0.9231 0.9231 1.0000 R 0
local_words_7nt_m23 MA1648.1 local_words_7nt_m23local_words_7nt_m23 TCF12(var.2) 0.757 0.641 13 11 11 13 0.8462 0.8462 1.0000 D 1
local_words_7nt_m23 MA0522.3 local_words_7nt_m23local_words_7nt_m23 TCF3 0.750 0.635 13 11 11 13 0.8462 0.8462 1.0000 D 1
local_words_7nt_m23 MA0691.1 local_words_7nt_m23local_words_7nt_m23 TFAP4 0.825 0.635 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA1109.1 local_words_7nt_m23local_words_7nt_m23 NEUROD1 0.716 0.613 13 13 12 14 0.8571 0.9231 0.9231 R -1
local_words_7nt_m23 MA0816.1 local_words_7nt_m23local_words_7nt_m23 Ascl2 0.791 0.608 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m23 MA0819.1 local_words_7nt_m23local_words_7nt_m23 CLOCK 0.779 0.599 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA1100.2 local_words_7nt_m23local_words_7nt_m23 ASCL1 0.773 0.595 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA1570.1 local_words_7nt_m23local_words_7nt_m23 TFAP4(var.2) 0.771 0.593 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA1635.1 local_words_7nt_m23local_words_7nt_m23 BHLHE22(var.2) 0.744 0.572 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA1638.1 local_words_7nt_m23local_words_7nt_m23 HAND2 0.723 0.556 13 10 10 13 0.7692 0.7692 1.0000 R 1
local_words_7nt_m23 MA0807.1 local_words_7nt_m23local_words_7nt_m23 TBX5 0.895 0.551 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m23 MA0806.1 local_words_7nt_m23local_words_7nt_m23 TBX4 0.885 0.545 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m23 MA0048.2 local_words_7nt_m23local_words_7nt_m23 NHLH1 0.701 0.539 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m23 MA0100.3 local_words_7nt_m23local_words_7nt_m23 MYB 0.701 0.539 13 10 10 13 0.7692 0.7692 1.0000 D 1
local_words_7nt_m23 MA0803.1 local_words_7nt_m23local_words_7nt_m23 TBX15 0.868 0.534 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m23 MA0805.1 local_words_7nt_m23local_words_7nt_m23 TBX1 0.849 0.522 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m23 MA0801.1 local_words_7nt_m23local_words_7nt_m23 MGA 0.829 0.510 13 8 8 13 0.6154 0.6154 1.0000 R 0
local_words_7nt_m23 MA1567.1 local_words_7nt_m23local_words_7nt_m23 TBX6 0.760 0.489 13 10 9 14 0.6429 0.6923 0.9000 R -1
local_words_7nt_m23 MA1566.1 local_words_7nt_m23local_words_7nt_m23 TBX3 0.749 0.481 13 10 9 14 0.6429 0.6923 0.9000 R -1
local_words_7nt_m23 MA0690.1 local_words_7nt_m23local_words_7nt_m23 TBX21 0.718 0.461 13 10 9 14 0.6429 0.6923 0.9000 R -1
local_words_7nt_m23 MA0802.1 local_words_7nt_m23local_words_7nt_m23 TBR1 0.847 0.452 13 10 8 15 0.5333 0.6154 0.8000 R -2
local_words_7nt_m23 MA0688.1 local_words_7nt_m23local_words_7nt_m23 TBX2 0.743 0.446 13 11 9 15 0.6000 0.6923 0.8182 R -2
local_words_7nt_m23 MA0689.1 local_words_7nt_m23local_words_7nt_m23 TBX20 0.720 0.432 13 11 9 15 0.6000 0.6923 0.8182 R -2
local_words_7nt_m23 MA1647.1 local_words_7nt_m23local_words_7nt_m23 PRDM4 0.716 0.429 13 11 9 15 0.6000 0.6923 0.8182 D 4
local_words_7nt_m23 MA0480.1 local_words_7nt_m23local_words_7nt_m23 Foxo1 0.716 0.429 13 11 9 15 0.6000 0.6923 0.8182 D 4 
 Host name	pedagogix
 Job started	2020-04-14.160608
 Job done	2020-04-14.160720
 Seconds	10.3
	user	10.3
	system	1.19
	cuser	56.27
;	csystem	3.35